Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.67■□□□□ 0.9
LIG3P49916 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
LIG3P49916 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
LIG3P49916 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LIG3P49916 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.67■□□□□ 0.9
LIG3P49916 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
LIG3P49916 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.66■□□□□ 0.9
LIG3P49916 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.66■□□□□ 0.9
LIG3P49916 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.66■□□□□ 0.9
LIG3P49916 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.66■□□□□ 0.9
LIG3P49916 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIG3P49916 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LIG3P49916 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG3P49916 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
LIG3P49916 PLK5-205ENST00000642079 1969 ntBASIC20.65■□□□□ 0.9
LIG3P49916 AC099778.1-201ENST00000568593 1911 ntBASIC20.65■□□□□ 0.9
LIG3P49916 AC116050.2-201ENST00000612102 1779 ntBASIC20.65■□□□□ 0.9
LIG3P49916 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG3P49916 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG3P49916 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
LIG3P49916 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.65■□□□□ 0.9
LIG3P49916 BX276092.2-201ENST00000417668 665 ntBASIC20.65■□□□□ 0.9
LIG3P49916 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG3P49916 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.65■□□□□ 0.9
LIG3P49916 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG3P49916 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG3P49916 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.65■□□□□ 0.9
LIG3P49916 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG3P49916 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG3P49916 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIG3P49916 AL512408.1-201ENST00000569378 2000 ntBASIC20.65■□□□□ 0.9
LIG3P49916 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIG3P49916 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIG3P49916 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIG3P49916 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIG3P49916 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIG3P49916 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
LIG3P49916 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG3P49916 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIG3P49916 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIG3P49916 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG3P49916 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG3P49916 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.64■□□□□ 0.89
LIG3P49916 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.64■□□□□ 0.89
LIG3P49916 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.64■□□□□ 0.89
LIG3P49916 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.64■□□□□ 0.89
LIG3P49916 AC098934.4-201ENST00000564127 592 ntBASIC20.64■□□□□ 0.89
LIG3P49916 MIR4758-201ENST00000577688 71 ntBASIC20.64■□□□□ 0.89
LIG3P49916 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIG3P49916 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.64■□□□□ 0.89
LIG3P49916 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.64■□□□□ 0.89
LIG3P49916 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.63■□□□□ 0.89
LIG3P49916 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
LIG3P49916 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.63■□□□□ 0.89
LIG3P49916 AC069152.1-201ENST00000438030 544 ntBASIC20.63■□□□□ 0.89
LIG3P49916 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.63■□□□□ 0.89
LIG3P49916 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.63■□□□□ 0.89
LIG3P49916 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.63■□□□□ 0.89
LIG3P49916 AL162377.1-201ENST00000618844 1793 ntBASIC20.63■□□□□ 0.89
LIG3P49916 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
LIG3P49916 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.63■□□□□ 0.89
LIG3P49916 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.63■□□□□ 0.89
LIG3P49916 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
LIG3P49916 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.63■□□□□ 0.89
LIG3P49916 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
LIG3P49916 AC120498.9-201ENST00000339021 3867 ntBASIC20.63■□□□□ 0.89
LIG3P49916 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
LIG3P49916 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIG3P49916 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.62■□□□□ 0.89
LIG3P49916 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms