Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.37■□□□□ 0.37
SOX2P48431 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.37■□□□□ 0.37
SOX2P48431 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SOX2P48431 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.37■□□□□ 0.37
SOX2P48431 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SOX2P48431 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX2P48431 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SOX2P48431 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX2P48431 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
SOX2P48431 Z82202.1-201ENST00000623446 1880 ntBASIC17.37■□□□□ 0.37
SOX2P48431 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX2P48431 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX2P48431 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SOX2P48431 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SOX2P48431 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SOX2P48431 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX2P48431 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX2P48431 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX2P48431 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX2P48431 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.36■□□□□ 0.37
SOX2P48431 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SOX2P48431 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.36■□□□□ 0.37
SOX2P48431 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX2P48431 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.36■□□□□ 0.37
SOX2P48431 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 CYP21A1P-202ENST00000354927 1481 ntBASIC17.36■□□□□ 0.37
SOX2P48431 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SOX2P48431 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SOX2P48431 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.36■□□□□ 0.37
SOX2P48431 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX2P48431 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
SOX2P48431 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.35■□□□□ 0.37
SOX2P48431 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.35■□□□□ 0.37
SOX2P48431 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 KRT19P1-201ENST00000405746 1186 ntBASIC17.35■□□□□ 0.37
SOX2P48431 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC17.35■□□□□ 0.37
SOX2P48431 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.35■□□□□ 0.37
SOX2P48431 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SOX2P48431 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.35■□□□□ 0.37
SOX2P48431 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.35■□□□□ 0.37
SOX2P48431 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX2P48431 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 AC009237.14-201ENST00000609975 1594 ntBASIC17.35■□□□□ 0.37
SOX2P48431 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SOX2P48431 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX2P48431 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.35■□□□□ 0.37
SOX2P48431 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.35■□□□□ 0.37
SOX2P48431 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SOX2P48431 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.34■□□□□ 0.37
SOX2P48431 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX2P48431 PARP1-202ENST00000366792 553 ntTSL 3 BASIC17.34■□□□□ 0.37
SOX2P48431 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SOX2P48431 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SOX2P48431 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SOX2P48431 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
SOX2P48431 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.34■□□□□ 0.37
SOX2P48431 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX2P48431 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX2P48431 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.34■□□□□ 0.37
SOX2P48431 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.34■□□□□ 0.37
SOX2P48431 MYCNOS-205ENST00000641950 531 ntBASIC17.34■□□□□ 0.37
SOX2P48431 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SOX2P48431 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SOX2P48431 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX2P48431 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SOX2P48431 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SOX2P48431 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SOX2P48431 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SOX2P48431 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SOX2P48431 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SOX2P48431 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SOX2P48431 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SOX2P48431 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SOX2P48431 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.33■□□□□ 0.37
SOX2P48431 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms