Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL4A5P29400 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL4A5P29400 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL4A5P29400 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL4A5P29400 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC23.89■■□□□ 1.42
COL4A5P29400 KRT18P38-201ENST00000449496 1282 ntBASIC23.89■■□□□ 1.42
COL4A5P29400 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC23.89■■□□□ 1.42
COL4A5P29400 CD81-212ENST00000526072 1172 ntTSL 5 BASIC23.89■■□□□ 1.42
COL4A5P29400 CYGB-204ENST00000589342 815 ntTSL 3 BASIC23.89■■□□□ 1.42
COL4A5P29400 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC23.89■■□□□ 1.42
COL4A5P29400 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23.89■■□□□ 1.42
COL4A5P29400 AL023803.3-201ENST00000615559 522 ntBASIC23.89■■□□□ 1.42
COL4A5P29400 AC116562.4-202ENST00000641738 218 ntBASIC23.89■■□□□ 1.42
COL4A5P29400 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL4A5P29400 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC23.89■■□□□ 1.42
COL4A5P29400 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL4A5P29400 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL4A5P29400 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
COL4A5P29400 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL4A5P29400 DPP3P2-201ENST00000416030 1696 ntBASIC23.89■■□□□ 1.41
COL4A5P29400 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.89■■□□□ 1.41
COL4A5P29400 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL4A5P29400 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
COL4A5P29400 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL4A5P29400 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC23.89■■□□□ 1.41
COL4A5P29400 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.89■■□□□ 1.41
COL4A5P29400 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC23.89■■□□□ 1.41
COL4A5P29400 AC010653.2-201ENST00000623505 997 ntBASIC23.89■■□□□ 1.41
COL4A5P29400 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.89■■□□□ 1.41
COL4A5P29400 IER3-202ENST00000376377 1350 ntBASIC23.89■■□□□ 1.41
COL4A5P29400 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.88■■□□□ 1.41
COL4A5P29400 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC23.88■■□□□ 1.41
COL4A5P29400 AC092647.4-201ENST00000457211 535 ntBASIC23.88■■□□□ 1.41
COL4A5P29400 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC23.88■■□□□ 1.41
COL4A5P29400 AL441883.1-201ENST00000566170 1045 ntBASIC23.88■■□□□ 1.41
COL4A5P29400 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.88■■□□□ 1.41
COL4A5P29400 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC23.88■■□□□ 1.41
COL4A5P29400 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.88■■□□□ 1.41
COL4A5P29400 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL4A5P29400 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
COL4A5P29400 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC23.87■■□□□ 1.41
COL4A5P29400 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.87■■□□□ 1.41
COL4A5P29400 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC23.87■■□□□ 1.41
COL4A5P29400 AC083849.1-201ENST00000615227 514 ntBASIC23.87■■□□□ 1.41
COL4A5P29400 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
COL4A5P29400 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
COL4A5P29400 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC23.87■■□□□ 1.41
COL4A5P29400 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 SLC25A1P2-201ENST00000430693 912 ntBASIC23.86■■□□□ 1.41
COL4A5P29400 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.86■■□□□ 1.41
COL4A5P29400 CCR12P-201ENST00000446203 998 ntBASIC23.86■■□□□ 1.41
COL4A5P29400 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC23.86■■□□□ 1.41
COL4A5P29400 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 AL023973.1-201ENST00000624619 620 ntBASIC23.86■■□□□ 1.41
COL4A5P29400 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC23.86■■□□□ 1.41
COL4A5P29400 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 AL450487.1-201ENST00000426799 995 ntBASIC23.86■■□□□ 1.41
COL4A5P29400 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC23.86■■□□□ 1.41
COL4A5P29400 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC23.86■■□□□ 1.41
COL4A5P29400 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC23.86■■□□□ 1.41
COL4A5P29400 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
COL4A5P29400 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
COL4A5P29400 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL4A5P29400 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL4A5P29400 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL4A5P29400 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL4A5P29400 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL4A5P29400 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
COL4A5P29400 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC23.85■■□□□ 1.41
COL4A5P29400 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
COL4A5P29400 HCG4P8-203ENST00000443049 980 ntBASIC23.85■■□□□ 1.41
COL4A5P29400 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC23.85■■□□□ 1.41
COL4A5P29400 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC23.85■■□□□ 1.41
COL4A5P29400 CLEC4GP1-201ENST00000596555 870 ntBASIC23.85■■□□□ 1.41
COL4A5P29400 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC23.85■■□□□ 1.41
COL4A5P29400 AC012313.10-201ENST00000623509 926 ntBASIC23.85■■□□□ 1.41
COL4A5P29400 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms