Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RB1P06400 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
RB1P06400 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RB1P06400 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.97■□□□□ 0.95
RB1P06400 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RB1P06400 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RB1P06400 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RB1P06400 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
RB1P06400 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
RB1P06400 AC092647.4-201ENST00000457211 535 ntBASIC20.97■□□□□ 0.95
RB1P06400 AC008040.2-201ENST00000461049 708 ntBASIC20.97■□□□□ 0.95
RB1P06400 KRT18P56-201ENST00000507275 550 ntBASIC20.97■□□□□ 0.95
RB1P06400 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.97■□□□□ 0.95
RB1P06400 AL121603.2-201ENST00000557373 2117 ntBASIC20.97■□□□□ 0.95
RB1P06400 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.97■□□□□ 0.95
RB1P06400 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RB1P06400 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.97■□□□□ 0.95
RB1P06400 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RB1P06400 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
RB1P06400 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.96■□□□□ 0.95
RB1P06400 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.96■□□□□ 0.95
RB1P06400 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 AC007663.1-201ENST00000438948 1240 ntBASIC20.96■□□□□ 0.95
RB1P06400 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RB1P06400 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RB1P06400 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.96■□□□□ 0.95
RB1P06400 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
RB1P06400 KRT126P-201ENST00000549467 1181 ntBASIC20.96■□□□□ 0.95
RB1P06400 AL512604.3-201ENST00000569583 964 ntBASIC20.96■□□□□ 0.95
RB1P06400 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.96■□□□□ 0.95
RB1P06400 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
RB1P06400 AL031432.5-201ENST00000641059 760 ntBASIC20.96■□□□□ 0.95
RB1P06400 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.96■□□□□ 0.95
RB1P06400 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.96■□□□□ 0.95
RB1P06400 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
RB1P06400 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.95■□□□□ 0.94
RB1P06400 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.95■□□□□ 0.94
RB1P06400 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RB1P06400 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
RB1P06400 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 AC009947.2-201ENST00000444014 672 ntBASIC20.95■□□□□ 0.94
RB1P06400 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.95■□□□□ 0.94
RB1P06400 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.95■□□□□ 0.94
RB1P06400 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
RB1P06400 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
RB1P06400 AL121956.5-201ENST00000625261 221 ntBASIC20.95■□□□□ 0.94
RB1P06400 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.95■□□□□ 0.94
RB1P06400 HLA-A-209ENST00000638375 975 ntBASIC20.95■□□□□ 0.94
RB1P06400 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
RB1P06400 AL024507.2-201ENST00000606070 2574 ntBASIC20.94■□□□□ 0.94
RB1P06400 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.94■□□□□ 0.94
RB1P06400 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
RB1P06400 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.94■□□□□ 0.94
RB1P06400 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
RB1P06400 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.94■□□□□ 0.94
RB1P06400 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.94■□□□□ 0.94
RB1P06400 AC141257.4-201ENST00000634557 245 ntBASIC20.94■□□□□ 0.94
RB1P06400 AC136944.6-201ENST00000634818 245 ntBASIC20.94■□□□□ 0.94
RB1P06400 AC005229.4-201ENST00000610085 2198 ntBASIC20.94■□□□□ 0.94
RB1P06400 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.94■□□□□ 0.94
RB1P06400 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.94■□□□□ 0.94
RB1P06400 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
RB1P06400 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms