Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TMX2-CTNND1H3BSU7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.4■□□□□ 0.7
TMX2-CTNND1H3BSU7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TMX2-CTNND1H3BSU7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TMX2-CTNND1H3BSU7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TMX2-CTNND1H3BSU7 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
TMX2-CTNND1H3BSU7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC023632.3-201ENST00000521633 145 ntBASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 AL121829.2-201ENST00000620908 328 ntBASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TMX2-CTNND1H3BSU7 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TMX2-CTNND1H3BSU7 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TMX2-CTNND1H3BSU7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 AL353807.1-201ENST00000427475 662 ntBASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC113410.3-201ENST00000623366 203 ntBASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TMX2-CTNND1H3BSU7 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 AC011484.1-201ENST00000377652 1995 ntBASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TMX2-CTNND1H3BSU7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms