Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC6□□□□□ -1.45
COL6A3P12111 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A3P12111 AR-201ENST00000374690 10652 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 AC024651.2-201ENST00000562480 2098 ntBASIC5.99□□□□□ -1.45
COL6A3P12111 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC5.99□□□□□ -1.45
COL6A3P12111 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 AL365220.1-201ENST00000432923 399 ntBASIC5.99□□□□□ -1.45
COL6A3P12111 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.99□□□□□ -1.45
COL6A3P12111 RPL10P17-201ENST00000453852 316 ntBASIC5.99□□□□□ -1.45
COL6A3P12111 AC091965.3-201ENST00000506236 208 ntBASIC5.99□□□□□ -1.45
COL6A3P12111 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A3P12111 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.99□□□□□ -1.45
COL6A3P12111 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A3P12111 AC053481.3-201ENST00000577881 843 ntBASIC5.99□□□□□ -1.45
COL6A3P12111 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
COL6A3P12111 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.99□□□□□ -1.45
COL6A3P12111 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
COL6A3P12111 PRPF8-201ENST00000304992 7295 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
COL6A3P12111 CPM-211ENST00000551568 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 ARG1-203ENST00000368087 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.99□□□□□ -1.45
COL6A3P12111 ZNF236-201ENST00000253159 8124 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 TMEM167B-201ENST00000338272 3730 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 RNF130-207ENST00000522208 9945 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A3P12111 MYO1E-201ENST00000288235 8673 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A3P12111 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.99□□□□□ -1.45
COL6A3P12111 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.99□□□□□ -1.45
COL6A3P12111 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.99□□□□□ -1.45
COL6A3P12111 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.99□□□□□ -1.45
COL6A3P12111 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
COL6A3P12111 MTERF4-222ENST00000614476 4524 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
COL6A3P12111 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC5.99□□□□□ -1.45
COL6A3P12111 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC5.99□□□□□ -1.45
COL6A3P12111 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
COL6A3P12111 PGPEP1-202ENST00000269919 7092 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 ZNF733P-202ENST00000444809 1573 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 GK5-201ENST00000392993 9837 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A3P12111 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A3P12111 RPL12P17-201ENST00000432393 498 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A3P12111 AC011447.4-201ENST00000587562 111 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 NAV2-201ENST00000349880 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 ARHGEF9-222ENST00000636048 5059 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A3P12111 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A3P12111 FBN2-201ENST00000262464 10724 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 RBMXL1-202ENST00000399794 5084 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
COL6A3P12111 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL6A3P12111 LAMA1-201ENST00000389658 9657 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 AKAP2-202ENST00000374525 6866 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 SESTD1-203ENST00000428443 10615 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 RNA5SP30-201ENST00000365552 115 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A3P12111 KRTAP3-4P-201ENST00000430780 280 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A3P12111 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A3P12111 AP002373.2-201ENST00000541631 1060 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.98□□□□□ -1.45
COL6A3P12111 AC012616.1-201ENST00000600294 197 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 RTL10-203ENST00000407472 6523 ntAPPRIS P2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 SCRN1-206ENST00000426154 5275 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
COL6A3P12111 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC5.98□□□□□ -1.45
COL6A3P12111 PIK3C2B-202ENST00000367187 7686 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 IGSF1-206ENST00000370910 4406 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 SLC44A1-201ENST00000374720 10511 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
COL6A3P12111 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 LRRC15-201ENST00000347624 5883 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
COL6A3P12111 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
COL6A3P12111 AC025750.1-201ENST00000399891 379 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A3P12111 CDK7P1-201ENST00000434574 693 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 RN7SL561P-201ENST00000488553 281 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A3P12111 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC5.98□□□□□ -1.45
COL6A3P12111 HSPE1P2-201ENST00000554777 306 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 MIR3189-201ENST00000578735 73 ntBASIC5.98□□□□□ -1.45
COL6A3P12111 MIR3124-201ENST00000582636 67 ntBASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms