Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 OFD1P10Y-201ENST00000434110 1433 ntBASIC10.43□□□□□ -0.74
CUX2O14529 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
CUX2O14529 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC10.42□□□□□ -0.74
CUX2O14529 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC10.42□□□□□ -0.74
CUX2O14529 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX2O14529 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC10.42□□□□□ -0.74
CUX2O14529 EIF1P7-201ENST00000487533 337 ntBASIC10.42□□□□□ -0.74
CUX2O14529 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX2O14529 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC10.42□□□□□ -0.74
CUX2O14529 AC104581.5-201ENST00000624171 7141 ntBASIC10.42□□□□□ -0.74
CUX2O14529 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX2O14529 CYP27C1-201ENST00000335247 4401 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 AC012618.3-205ENST00000637896 1496 ntBASIC10.42□□□□□ -0.74
CUX2O14529 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 AC119674.1-204ENST00000641348 1343 ntBASIC10.42□□□□□ -0.74
CUX2O14529 MRE11-201ENST00000323929 6897 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX2O14529 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CUX2O14529 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX2O14529 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX2O14529 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC10.42□□□□□ -0.74
CUX2O14529 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
CUX2O14529 SNORA11C-201ENST00000408532 129 ntBASIC10.42□□□□□ -0.74
CUX2O14529 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC10.42□□□□□ -0.74
CUX2O14529 AC092905.1-201ENST00000467527 949 ntBASIC10.42□□□□□ -0.74
CUX2O14529 RPS4XP1-201ENST00000482189 787 ntBASIC10.42□□□□□ -0.74
CUX2O14529 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX2O14529 IGKV1D-22-201ENST00000518953 324 ntBASIC10.42□□□□□ -0.74
CUX2O14529 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC10.42□□□□□ -0.74
CUX2O14529 AL121579.2-201ENST00000555466 590 ntBASIC10.42□□□□□ -0.74
CUX2O14529 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX2O14529 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC10.42□□□□□ -0.74
CUX2O14529 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX2O14529 AC062022.1-201ENST00000451026 1684 ntBASIC10.41□□□□□ -0.74
CUX2O14529 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 AL035419.1-201ENST00000397037 564 ntBASIC10.41□□□□□ -0.74
CUX2O14529 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC10.41□□□□□ -0.74
CUX2O14529 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX2O14529 OR7E157P-201ENST00000494376 911 ntBASIC10.41□□□□□ -0.74
CUX2O14529 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC10.41□□□□□ -0.74
CUX2O14529 RAB9BP1-201ENST00000519581 626 ntBASIC10.41□□□□□ -0.74
CUX2O14529 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC10.41□□□□□ -0.74
CUX2O14529 IGLV3-6-201ENST00000523937 250 ntBASIC10.41□□□□□ -0.74
CUX2O14529 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX2O14529 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX2O14529 TAS2R6P-201ENST00000605022 826 ntBASIC10.41□□□□□ -0.74
CUX2O14529 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX2O14529 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC10.41□□□□□ -0.74
CUX2O14529 CUBNP3-201ENST00000457461 1784 ntBASIC10.41□□□□□ -0.74
CUX2O14529 AC232271.1-201ENST00000602455 2715 ntBASIC10.41□□□□□ -0.74
CUX2O14529 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC10.41□□□□□ -0.74
CUX2O14529 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
CUX2O14529 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CUX2O14529 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX2O14529 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
CUX2O14529 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
CUX2O14529 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC10.4□□□□□ -0.74
CUX2O14529 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC10.4□□□□□ -0.74
CUX2O14529 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
CUX2O14529 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC10.4□□□□□ -0.74
CUX2O14529 PANDAR-201ENST00000629595 1506 ntBASIC10.4□□□□□ -0.74
CUX2O14529 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX2O14529 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX2O14529 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.74
CUX2O14529 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC10.4□□□□□ -0.74
CUX2O14529 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC10.4□□□□□ -0.74
CUX2O14529 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC10.4□□□□□ -0.74
CUX2O14529 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC10.4□□□□□ -0.74
CUX2O14529 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC10.4□□□□□ -0.74
CUX2O14529 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC10.4□□□□□ -0.74
CUX2O14529 RPL5P22-201ENST00000480199 884 ntBASIC10.4□□□□□ -0.74
CUX2O14529 OR4A42P-201ENST00000531397 938 ntBASIC10.4□□□□□ -0.74
CUX2O14529 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC10.4□□□□□ -0.74
CUX2O14529 AC063949.1-201ENST00000552900 865 ntBASIC10.4□□□□□ -0.74
CUX2O14529 AP000919.1-201ENST00000582850 985 ntBASIC10.4□□□□□ -0.74
CUX2O14529 BNIP3P22-201ENST00000593399 556 ntBASIC10.4□□□□□ -0.74
CUX2O14529 NCOA4P3-201ENST00000513203 1877 ntBASIC10.4□□□□□ -0.74
CUX2O14529 MGAT4A-202ENST00000393487 8382 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.74
CUX2O14529 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC10.4□□□□□ -0.75
CUX2O14529 AC023154.1-201ENST00000510351 2517 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
CUX2O14529 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC10.4□□□□□ -0.75
CUX2O14529 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
CUX2O14529 SAMM50P1-201ENST00000455403 1399 ntBASIC10.4□□□□□ -0.75
CUX2O14529 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC10.4□□□□□ -0.75
CUX2O14529 AC012618.3-201ENST00000415793 2042 ntTSL 5 BASIC10.4□□□□□ -0.75
CUX2O14529 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC10.39□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms