Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AP003972.1-201ENST00000625192 5446 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 MIR640-201ENST00000385086 96 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC015983.1-201ENST00000441577 373 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC004129.2-201ENST00000457229 287 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 OARD1-211ENST00000480585 829 ntTSL 3 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 BX510359.5-201ENST00000515651 304 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC024255.1-201ENST00000614376 102 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 SLC7A2-204ENST00000494857 7622 ntAPPRIS ALT1 TSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 PARP4P2-201ENST00000446672 3326 ntBASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 NAV2-213ENST00000533917 5084 ntTSL 2 BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 AC125793.1-201ENST00000565238 1493 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
SHANK3Q9BYB0 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 AL359976.1-201ENST00000418655 3528 ntBASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 AC022215.1-201ENST00000481770 362 ntBASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 HMGN2P6-201ENST00000551091 273 ntBASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 MIR8080-201ENST00000622224 89 ntBASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 TLN2-211ENST00000636159 7441 ntTSL 5 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 HLF-210ENST00000575345 3589 ntTSL 2 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
SHANK3Q9BYB0 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 GDF9-202ENST00000378673 2640 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC089998.1-201ENST00000548575 3141 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 RNA5SP333-201ENST00000363466 118 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 RNA5SP334-201ENST00000364825 118 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 CNOT7P2-201ENST00000441051 832 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 SPRYD7P1-201ENST00000443861 570 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 BX284632.1-201ENST00000478218 541 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 OR56A7P-201ENST00000524865 941 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 HSPE1P2-201ENST00000554777 306 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 RN7SL708P-201ENST00000580952 299 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AC090510.2-201ENST00000617465 629 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 AL157831.2-201ENST00000564681 3095 ntBASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
SHANK3Q9BYB0 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms