Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXD4P09016 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 AC104966.1-201ENST00000467010 1464 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 RN7SKP275-201ENST00000364626 301 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HOXD4P09016 U3.23-201ENST00000391132 200 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXD4P09016 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 AL691447.1-201ENST00000419456 387 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXD4P09016 AC114982.2-201ENST00000461396 358 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXD4P09016 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXD4P09016 AL133399.1-201ENST00000527476 298 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.8□□□□□ -1.48
HOXD4P09016 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 AC005632.2-201ENST00000564271 828 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXD4P09016 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 AC124916.2-201ENST00000604416 224 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 AC018692.2-201ENST00000624130 348 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXD4P09016 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
HOXD4P09016 GLYATL1P1-201ENST00000528297 1607 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXD4P09016 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
HOXD4P09016 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXD4P09016 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.8□□□□□ -1.48
HOXD4P09016 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
HOXD4P09016 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.8□□□□□ -1.48
HOXD4P09016 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
HOXD4P09016 AC092724.1-201ENST00000624623 3397 ntBASIC5.8□□□□□ -1.48
HOXD4P09016 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
HOXD4P09016 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXD4P09016 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
HOXD4P09016 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 PPP2R3A-202ENST00000334546 2196 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 CASC19-246ENST00000641625 1606 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 AC005522.1-201ENST00000395416 346 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 GCNT1P4-201ENST00000404096 329 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 RNU6-233P-201ENST00000410845 141 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 AC002127.1-201ENST00000421305 225 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXD4P09016 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 MED28P4-201ENST00000433137 572 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 RN7SL643P-201ENST00000471845 291 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 AP002453.1-201ENST00000492327 668 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 RPL5P14-201ENST00000494197 878 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 RNA5SP418-201ENST00000515951 117 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.79□□□□□ -1.48
HOXD4P09016 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXD4P09016 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC5.79□□□□□ -1.48
HOXD4P09016 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 AL138895.2-201ENST00000603019 178 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 AL583832.1-201ENST00000603227 784 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 AC005393.1-201ENST00000617916 584 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 AP001264.1-201ENST00000620602 703 ntBASIC5.79□□□□□ -1.48
HOXD4P09016 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
HOXD4P09016 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 P2RY14-202ENST00000424796 1780 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
HOXD4P09016 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
HOXD4P09016 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.79□□□□□ -1.48
HOXD4P09016 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
HOXD4P09016 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms