Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CARSP2-201ENST00000520688 277 ntBASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 AC093524.1-201ENST00000564266 1094 ntBASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 MIR4428-201ENST00000584884 73 ntBASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 AC010463.3-201ENST00000594077 500 ntBASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 RPS27AP19-201ENST00000597285 458 ntBASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 AP005212.3-201ENST00000619964 528 ntBASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 TEX41-279ENST00000629149 609 ntTSL 5 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 OR8G3P-202ENST00000641572 1255 ntBASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC6.9□□□□□ -1.3
TRIM39Q9HCM9 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 CREM-216ENST00000429130 1476 ntTSL 5 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 SLC2A3P4-201ENST00000521259 1471 ntBASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 AL359195.2-201ENST00000623657 4412 ntBASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 AC102941.1-201ENST00000567616 1537 ntBASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 AC079178.2-201ENST00000439323 1624 ntBASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
TRIM39Q9HCM9 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC004014.2-201ENST00000623718 5122 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 RNU6-906P-201ENST00000384700 70 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 Z68694.1-201ENST00000413929 841 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 RBMY3AP-201ENST00000449381 1145 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC008280.2-201ENST00000455473 307 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 SEC11A-202ENST00000455959 1223 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 RPL5P13-201ENST00000462840 709 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC023245.1-201ENST00000468501 517 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AL079303.1-201ENST00000486611 463 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 RPS10P20-201ENST00000494130 463 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 RNU2-45P-201ENST00000516068 187 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 OR7E128P-201ENST00000532736 1024 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC009729.1-201ENST00000548873 1133 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC069240.2-201ENST00000550242 609 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC008751.2-201ENST00000597885 980 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 TP53TG1_2.1-201ENST00000611226 182 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AL359513.1-201ENST00000614364 557 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC183089.2-201ENST00000637931 916 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 MFSD8-213ENST00000641134 1327 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC099786.3-201ENST00000565735 1410 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 MFSD8-220ENST00000641243 1422 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 Z93929.1-201ENST00000418200 1475 ntBASIC6.89□□□□□ -1.31
TRIM39Q9HCM9 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms