Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 LRRC37A17P-201ENST00000570311 4693 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC007842.1-201ENST00000597336 2039 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 RNA5SP478-201ENST00000364657 115 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 RNA5SP211-201ENST00000365516 117 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 Z80107.2-201ENST00000445127 392 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 CEACAMP10-202ENST00000495431 496 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 FO393422.1-201ENST00000603908 708 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC007204.2-201ENST00000615022 616 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 IPO11-201ENST00000325324 4356 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 FAM199X-202ENST00000493442 7457 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 NCOA4P3-201ENST00000513203 1877 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 GAPDHP24-201ENST00000328713 983 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 RPL32P33-201ENST00000487023 394 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 RN7SL808P-201ENST00000496066 299 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 MRPS16P1-201ENST00000523462 412 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 AP001496.3-201ENST00000580230 913 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 AL049840.6-201ENST00000604583 345 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 AL049539.1-201ENST00000611964 459 ntBASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC7.74□□□□□ -1.17
SHANK3Q9BYB0 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 AL590762.4-201ENST00000425885 253 ntBASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 AC112187.1-201ENST00000455837 479 ntBASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 RN7SL547P-201ENST00000490793 290 ntBASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 RNF138P2-201ENST00000603490 592 ntBASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 AL691477.1-201ENST00000624398 162 ntBASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 AC136428.4-201ENST00000634254 1155 ntBASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 FO082842.1-201ENST00000423552 1370 ntBASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 RMST-210ENST00000640149 2844 ntTSL 5 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 FCRL5-201ENST00000361835 5390 ntAPPRIS P2 TSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
SHANK3Q9BYB0 AL356967.1-201ENST00000406305 431 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 MRPL53P1-201ENST00000414323 319 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 PTCD2P2-201ENST00000415579 1095 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 RPS4XP5-201ENST00000419038 768 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC099677.3-201ENST00000427081 395 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC091390.1-201ENST00000433904 331 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 RN7SL165P-201ENST00000477476 291 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC073610.1-201ENST00000489971 396 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 MINCR-206ENST00000524335 499 ntTSL 2 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 KCTD9P4-201ENST00000526766 1166 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AC013731.1-201ENST00000604340 883 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 AL445647.2-201ENST00000615170 130 ntBASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
SHANK3Q9BYB0 DROSHA-201ENST00000344624 5102 ntAPPRIS P4 TSL 5 BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms