Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MEAF6P1-201ENST00000416092 327 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 HSD52-202ENST00000436225 772 ntTSL 3 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC092570.2-201ENST00000452117 1143 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 ART2BP-201ENST00000453501 499 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC015820.1-201ENST00000473882 321 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LINC00518-202ENST00000479822 906 ntTSL 3 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC084024.2-201ENST00000503480 791 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC097375.1-201ENST00000507949 488 ntTSL 3 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 IGHVIII-38-1-201ENST00000521454 282 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 C1GALT1P3-201ENST00000522049 819 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 MTND2P26-201ENST00000528255 1029 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 EGLN3P1-201ENST00000541727 720 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 SALL4P7-201ENST00000555779 3120 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 SLC39A12-204ENST00000539911 2461 ntTSL 2 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 YES1P1-201ENST00000418510 1628 ntBASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
TRAIPQ9BWF2 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SLC24A1-209ENST00000537259 3983 ntAPPRIS ALT2 TSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SF3A3P1-201ENST00000446317 1477 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 BX664727.3-202ENST00000421686 1761 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SAMMSON-203ENST00000641005 2168 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AL355974.1-201ENST00000618896 1708 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SNORA11D-201ENST00000408548 128 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SNORA11E-201ENST00000408778 128 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 RNA5SP177-201ENST00000410122 107 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 PPIAP23-201ENST00000420099 497 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ANKRD54P1-201ENST00000433115 471 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC019080.2-201ENST00000453859 394 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AL390026.1-201ENST00000456647 457 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 CCNJP2-201ENST00000457810 1163 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC010468.1-201ENST00000461022 817 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC073522.1-201ENST00000483312 377 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 ANK3-213ENST00000486349 493 ntTSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NPY6R-201ENST00000503807 1112 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC108120.1-201ENST00000506543 991 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 CHCHD2P7-201ENST00000508008 452 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 NDUFA3P2-201ENST00000531434 232 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC010198.2-201ENST00000550612 259 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 DUXAP6-201ENST00000553858 601 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 MIR744-201ENST00000578242 98 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 MIR4437-201ENST00000581331 60 ntBASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC008764.3-201ENST00000597357 432 ntTSL 5 BASIC8.13□□□□□ -1.11
TRAIPQ9BWF2 AC005070.2-201ENST00000604391 260 ntBASIC8.13□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms