Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC5.87□□□□□ -1.47
SOX3P41225 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.87□□□□□ -1.47
SOX3P41225 TEX41-271ENST00000628213 993 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 CASC19-274ENST00000642018 970 ntBASIC5.87□□□□□ -1.47
SOX3P41225 OR7E91P-202ENST00000642062 1198 ntBASIC5.87□□□□□ -1.47
SOX3P41225 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.87□□□□□ -1.47
SOX3P41225 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
SOX3P41225 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
SOX3P41225 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 AC011455.2-201ENST00000599320 3336 ntBASIC5.86□□□□□ -1.47
SOX3P41225 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 AL136984.1-201ENST00000607611 1893 ntBASIC5.86□□□□□ -1.47
SOX3P41225 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 OR2W4P-201ENST00000406496 926 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AKR1B10P1-201ENST00000425765 942 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 AC108479.1-201ENST00000431142 427 ntBASIC5.86□□□□□ -1.47
SOX3P41225 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 OR6C71P-201ENST00000432580 913 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AC112492.2-201ENST00000432774 1030 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 BX679664.2-201ENST00000439282 283 ntBASIC5.86□□□□□ -1.47
SOX3P41225 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 POU5F1P5-201ENST00000445059 658 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 AC093166.3-201ENST00000448785 303 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC5.86□□□□□ -1.47
SOX3P41225 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 SLC25A51P1-201ENST00000468432 871 ntBASIC5.86□□□□□ -1.47
SOX3P41225 RN7SL643P-201ENST00000471845 291 ntBASIC5.86□□□□□ -1.47
SOX3P41225 RN7SL369P-201ENST00000477138 299 ntBASIC5.86□□□□□ -1.47
SOX3P41225 RPL37P23-201ENST00000492641 294 ntBASIC5.86□□□□□ -1.47
SOX3P41225 SNX18P25-201ENST00000510539 758 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AC106800.3-201ENST00000511389 308 ntBASIC5.86□□□□□ -1.47
SOX3P41225 HMGN1P17-201ENST00000513734 295 ntBASIC5.86□□□□□ -1.47
SOX3P41225 IGKV1D-22-201ENST00000518953 324 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 IGHV4-55-201ENST00000520889 368 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AP003080.1-202ENST00000526526 915 ntBASIC5.86□□□□□ -1.47
SOX3P41225 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC5.86□□□□□ -1.47
SOX3P41225 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC5.86□□□□□ -1.47
SOX3P41225 AP005901.4-201ENST00000577336 569 ntBASIC5.86□□□□□ -1.47
SOX3P41225 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC5.86□□□□□ -1.47
SOX3P41225 SMIM12P1-201ENST00000603004 274 ntBASIC5.86□□□□□ -1.47
SOX3P41225 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC5.86□□□□□ -1.47
SOX3P41225 AL109924.4-201ENST00000623089 670 ntBASIC5.86□□□□□ -1.47
SOX3P41225 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.86□□□□□ -1.47
SOX3P41225 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
SOX3P41225 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC5.86□□□□□ -1.47
SOX3P41225 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SOX3P41225 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SOX3P41225 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.85□□□□□ -1.47
SOX3P41225 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SOX3P41225 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
SOX3P41225 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.85□□□□□ -1.47
SOX3P41225 RN7SKP77-201ENST00000363261 353 ntBASIC5.85□□□□□ -1.47
SOX3P41225 VN1R12P-201ENST00000403778 876 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms