Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 CBX1P5-201ENST00000475330 559 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 AL110118.1-201ENST00000553543 400 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 AL049840.5-201ENST00000602827 552 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AC025171.4-201ENST00000607250 1047 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AC004808.2-201ENST00000627965 773 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC5.7□□□□□ -1.5
SPTA1P02549 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.7□□□□□ -1.5
SPTA1P02549 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 AC083806.2-201ENST00000617795 2685 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 SAGE3P-201ENST00000619800 1635 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 CTPS1-201ENST00000372616 2037 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SPTA1P02549 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 MGC15885-201ENST00000558940 2425 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 DNMBP-203ENST00000543621 4178 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 ZIM3-201ENST00000269834 2627 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 AL590762.1-201ENST00000391782 432 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 RN7SKP125-201ENST00000410481 302 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 KRTAP3-4P-201ENST00000430780 280 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 EEF1B2P5-201ENST00000444820 548 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 MORF4-201ENST00000447135 971 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AC002486.2-201ENST00000447806 590 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AC004453.1-201ENST00000487895 408 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 RN7SL184P-201ENST00000488308 297 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 DUTP7-201ENST00000507982 486 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC5.7□□□□□ -1.5
SPTA1P02549 AP000648.1-201ENST00000529682 397 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC5.7□□□□□ -1.5
SPTA1P02549 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.7□□□□□ -1.5
SPTA1P02549 FO393422.1-201ENST00000603908 708 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AL031601.1-201ENST00000605702 394 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 AL035661.1-201ENST00000620459 1144 ntBASIC5.7□□□□□ -1.5
SPTA1P02549 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 ERVW-1-202ENST00000603053 2763 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
SPTA1P02549 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
SPTA1P02549 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC5.7□□□□□ -1.5
SPTA1P02549 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC5.7□□□□□ -1.5
SPTA1P02549 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 RNFT1P3-201ENST00000340898 1052 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 RNU1-134P-201ENST00000362935 165 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 RNA5SP132-201ENST00000364725 118 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 RN7SKP59-201ENST00000410520 314 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.69□□□□□ -1.5
SPTA1P02549 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.69□□□□□ -1.5
SPTA1P02549 SEPT14P12-201ENST00000442280 560 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 HIGD1AP8-201ENST00000453927 274 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.69□□□□□ -1.5
SPTA1P02549 AC115223.1-201ENST00000466377 870 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 AC253576.1-201ENST00000511645 1156 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.69□□□□□ -1.5
SPTA1P02549 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SPTA1P02549 AP001922.4-201ENST00000526967 290 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 AC091078.2-201ENST00000557145 559 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 MIR4646-201ENST00000580775 63 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.69□□□□□ -1.5
SPTA1P02549 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SPTA1P02549 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
SPTA1P02549 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 AL161901.1-201ENST00000624954 3425 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 KIF6-208ENST00000538893 2386 ntTSL 5 BASIC5.69□□□□□ -1.5
SPTA1P02549 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SPTA1P02549 ZNF438-202ENST00000361310 3144 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SPTA1P02549 HMGB1P20-201ENST00000402555 677 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC5.69□□□□□ -1.5
SPTA1P02549 RPL36AP39-201ENST00000445859 318 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 AL356981.1-201ENST00000454879 684 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 AC004815.1-201ENST00000484185 331 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.69□□□□□ -1.5
SPTA1P02549 AC021146.10-201ENST00000515628 706 ntBASIC5.69□□□□□ -1.5
SPTA1P02549 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.69□□□□□ -1.5
SPTA1P02549 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
SPTA1P02549 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms