Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 MIR378J-201ENST00000611988 109 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 LINC02019-201ENST00000608605 2060 ntBASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC7.78□□□□□ -1.16
SHANK3Q9BYB0 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.16
SHANK3Q9BYB0 AC011504.1-201ENST00000623331 4103 ntBASIC7.77□□□□□ -1.16
SHANK3Q9BYB0 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.16
SHANK3Q9BYB0 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.16
SHANK3Q9BYB0 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AP002364.1-201ENST00000623330 3386 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 MRRFP1-201ENST00000435941 1675 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 SELENOWP1-201ENST00000322792 252 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 OR10R3P-201ENST00000361688 942 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 RNA5SP507-201ENST00000363603 121 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 RPS7P3-201ENST00000443360 580 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AL512310.9-201ENST00000553311 948 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 GCNT2-202ENST00000316170 4381 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 YES1P1-201ENST00000418510 1628 ntBASIC7.77□□□□□ -1.17
SHANK3Q9BYB0 MAPK10-304ENST00000641341 3984 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 HEATR6-201ENST00000184956 3932 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 AC023421.1-201ENST00000590535 1785 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 MIR23A-201ENST00000385245 73 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 HMGB3P24-201ENST00000433260 622 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 Z84478.1-201ENST00000438230 1219 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 AL663074.2-201ENST00000440621 479 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 FRG2FP-204ENST00000453982 852 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 AC103563.5-201ENST00000455643 364 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 IGHV1-14-201ENST00000523391 241 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 OR4A40P-201ENST00000533878 948 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 MIR5095-201ENST00000578844 88 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 MIR4505-201ENST00000582238 73 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 AJ009632.2-209ENST00000634853 933 ntTSL 5 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 AC009166.2-201ENST00000624410 2833 ntBASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.76□□□□□ -1.17
SHANK3Q9BYB0 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 RNU1-24P-201ENST00000364285 165 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 TPT1-204ENST00000379060 764 ntTSL 5 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AL022331.1-201ENST00000429025 477 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 CFL1P1-202ENST00000432948 411 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 RN7SL57P-201ENST00000493687 290 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 SNORA43.3-201ENST00000517240 103 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC244502.2-201ENST00000543361 851 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC104785.1-201ENST00000603220 588 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 uc_338.18-201ENST00000615451 175 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 MIR193BHG-214ENST00000641765 509 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AC016583.1-201ENST00000624221 2431 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 AL359091.1-201ENST00000449048 1734 ntBASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
SHANK3Q9BYB0 FO393409.1-201ENST00000399325 1372 ntBASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms