Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 MIR188-201ENST00000385034 86 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 MTND2P12-201ENST00000417560 1252 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 DNAJC19P5-201ENST00000443295 316 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 MORF4-201ENST00000447135 971 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 RARRES2P3-201ENST00000457739 473 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 OR7E22P-201ENST00000478335 1035 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 RN7SL104P-201ENST00000498686 293 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 AC105036.1-201ENST00000566222 271 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 AL359091.2-201ENST00000609303 556 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.26□□□□□ -1.41
VPS35Q96QK1 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.26□□□□□ -1.41
VPS35Q96QK1 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
VPS35Q96QK1 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 RN7SKP86-201ENST00000410454 332 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 AL353626.3-201ENST00000413399 657 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC010740.1-201ENST00000417035 684 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 SERPINA7P1-201ENST00000443077 631 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 VPS25P1-201ENST00000455691 508 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC005017.1-201ENST00000482002 490 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 RNA5SP206-201ENST00000516703 121 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 AL078601.3-201ENST00000573303 535 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC011497.2-201ENST00000600255 639 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC005828.7-201ENST00000607331 556 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC010998.3-201ENST00000613871 631 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC024255.1-201ENST00000614376 102 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 C9-201ENST00000263408 2713 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
VPS35Q96QK1 AC099654.3-201ENST00000447087 1546 ntBASIC6.25□□□□□ -1.41
VPS35Q96QK1 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
VPS35Q96QK1 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
VPS35Q96QK1 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
VPS35Q96QK1 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.24□□□□□ -1.41
VPS35Q96QK1 GNRHR-201ENST00000226413 2164 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS35Q96QK1 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.24□□□□□ -1.41
VPS35Q96QK1 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS35Q96QK1 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.24□□□□□ -1.41
VPS35Q96QK1 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.24□□□□□ -1.41
VPS35Q96QK1 AL157831.2-201ENST00000564681 3095 ntBASIC6.24□□□□□ -1.41
VPS35Q96QK1 RN7SKP121-201ENST00000410842 305 ntBASIC6.24□□□□□ -1.41
VPS35Q96QK1 TIMM8BP2-201ENST00000445940 251 ntBASIC6.24□□□□□ -1.41
VPS35Q96QK1 RBMY2BP-202ENST00000451071 1156 ntBASIC6.24□□□□□ -1.41
VPS35Q96QK1 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.24□□□□□ -1.41
VPS35Q96QK1 AC113367.2-201ENST00000505749 160 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms