Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
COL4A4P53420 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 ABCC2-202ENST00000370449 5312 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL4A4P53420 MTHFD2P5-201ENST00000320415 844 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 FAM32BP-201ENST00000344033 333 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
COL4A4P53420 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC6.49□□□□□ -1.37
COL4A4P53420 RPL35AP24-201ENST00000413846 330 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A4P53420 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A4P53420 TRIM60P16-201ENST00000444048 694 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A4P53420 AC103563.5-201ENST00000455643 364 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 RN7SL222P-201ENST00000476452 299 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 AC108693.1-201ENST00000496068 432 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC6.49□□□□□ -1.37
COL4A4P53420 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A4P53420 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC6.49□□□□□ -1.37
COL4A4P53420 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.49□□□□□ -1.37
COL4A4P53420 AC118658.2-201ENST00000618697 459 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 OR7A1P-202ENST00000641542 1158 ntBASIC6.49□□□□□ -1.37
COL4A4P53420 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.49□□□□□ -1.37
COL4A4P53420 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.48□□□□□ -1.37
COL4A4P53420 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.48□□□□□ -1.37
COL4A4P53420 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.48□□□□□ -1.37
COL4A4P53420 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.48□□□□□ -1.37
COL4A4P53420 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 MFSD8-218ENST00000641186 4448 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 PPFIA2-220ENST00000550584 5405 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL4A4P53420 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 NMD3P2-201ENST00000421815 761 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 RN7SL610P-201ENST00000463845 291 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AC023818.1-201ENST00000498379 384 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC6.48□□□□□ -1.37
COL4A4P53420 DUTP7-201ENST00000507982 486 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.48□□□□□ -1.37
COL4A4P53420 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC6.48□□□□□ -1.37
COL4A4P53420 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC6.48□□□□□ -1.37
COL4A4P53420 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.48□□□□□ -1.37
COL4A4P53420 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 AC067852.5-201ENST00000589299 310 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AP002884.5-201ENST00000595053 1132 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AL049840.6-201ENST00000604583 345 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AL683813.2-201ENST00000605245 502 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AL021918.2-201ENST00000613415 194 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 MIR7155-201ENST00000615925 56 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AL357562.1-201ENST00000624911 609 ntBASIC6.48□□□□□ -1.37
COL4A4P53420 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC6.48□□□□□ -1.37
COL4A4P53420 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC6.48□□□□□ -1.37
COL4A4P53420 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL4A4P53420 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.47□□□□□ -1.37
COL4A4P53420 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 ZNF160-208ENST00000599056 4229 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.47□□□□□ -1.37
COL4A4P53420 DRP2-205ENST00000541709 6835 ntAPPRIS ALT1 TSL 2 BASIC6.47□□□□□ -1.37
COL4A4P53420 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC6.47□□□□□ -1.37
COL4A4P53420 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC6.47□□□□□ -1.37
COL4A4P53420 MIR433-201ENST00000384837 93 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC6.47□□□□□ -1.37
COL4A4P53420 TMA16P2-201ENST00000413187 601 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 AL596448.1-201ENST00000415024 392 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.47□□□□□ -1.37
COL4A4P53420 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL4A4P53420 AC126120.1-201ENST00000431082 470 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.47□□□□□ -1.37
COL4A4P53420 OTX2P1-201ENST00000450956 354 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 ASB8-215ENST00000540782 659 ntTSL 3 BASIC6.47□□□□□ -1.37
COL4A4P53420 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.47□□□□□ -1.37
COL4A4P53420 MIR4776-2-201ENST00000580204 80 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 AL136131.3-201ENST00000607600 188 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 Mico1.1-201ENST00000611698 204 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 AC024255.1-201ENST00000614376 102 ntBASIC6.47□□□□□ -1.37
COL4A4P53420 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 139.6 ms