Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC127526.2-201ENST00000426436 775 ntBASIC8.6□□□□□ -1.03
MSH6P52701 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC8.6□□□□□ -1.03
MSH6P52701 IGKV1OR10-1-201ENST00000442306 329 ntBASIC8.6□□□□□ -1.03
MSH6P52701 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC8.6□□□□□ -1.03
MSH6P52701 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC8.6□□□□□ -1.03
MSH6P52701 IGKV1OR22-5-201ENST00000458718 354 ntBASIC8.6□□□□□ -1.03
MSH6P52701 AC010343.2-201ENST00000510162 224 ntBASIC8.6□□□□□ -1.03
MSH6P52701 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC8.6□□□□□ -1.03
MSH6P52701 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC8.6□□□□□ -1.03
MSH6P52701 OR10G5P-201ENST00000532733 358 ntBASIC8.6□□□□□ -1.03
MSH6P52701 SETP3-201ENST00000581726 813 ntBASIC8.6□□□□□ -1.03
MSH6P52701 OR1N1-202ENST00000619659 939 ntBASIC8.6□□□□□ -1.03
MSH6P52701 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC8.6□□□□□ -1.03
MSH6P52701 AL161901.1-201ENST00000624954 3425 ntBASIC8.6□□□□□ -1.03
MSH6P52701 AC011416.1-201ENST00000514947 1732 ntBASIC8.59□□□□□ -1.03
MSH6P52701 ANK2-212ENST00000506722 8051 ntAPPRIS ALT2 TSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC8.59□□□□□ -1.03
MSH6P52701 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC8.59□□□□□ -1.03
MSH6P52701 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC8.59□□□□□ -1.03
MSH6P52701 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC8.59□□□□□ -1.03
MSH6P52701 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC8.59□□□□□ -1.03
MSH6P52701 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC8.59□□□□□ -1.03
MSH6P52701 GAS5-202ENST00000414075 413 ntTSL 2 BASIC8.59□□□□□ -1.03
MSH6P52701 CFL1P1-202ENST00000432948 411 ntBASIC8.59□□□□□ -1.03
MSH6P52701 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC8.59□□□□□ -1.03
MSH6P52701 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC8.59□□□□□ -1.03
MSH6P52701 UBA52P7-201ENST00000486088 380 ntBASIC8.59□□□□□ -1.03
MSH6P52701 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC8.59□□□□□ -1.03
MSH6P52701 CDH12P4-201ENST00000517835 295 ntBASIC8.59□□□□□ -1.03
MSH6P52701 CDH12P3-201ENST00000517935 295 ntBASIC8.59□□□□□ -1.03
MSH6P52701 CDH12P1-201ENST00000518435 295 ntBASIC8.59□□□□□ -1.03
MSH6P52701 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC8.59□□□□□ -1.03
MSH6P52701 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC8.59□□□□□ -1.03
MSH6P52701 OR7A1P-201ENST00000601206 970 ntBASIC8.59□□□□□ -1.03
MSH6P52701 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC8.59□□□□□ -1.03
MSH6P52701 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC8.59□□□□□ -1.03
MSH6P52701 HOTTIP_3.1-201ENST00000619957 337 ntBASIC8.59□□□□□ -1.03
MSH6P52701 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC8.59□□□□□ -1.03
MSH6P52701 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC8.59□□□□□ -1.03
MSH6P52701 AC009948.3-201ENST00000603415 1798 ntBASIC8.59□□□□□ -1.04
MSH6P52701 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
MSH6P52701 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC8.58□□□□□ -1.04
MSH6P52701 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
MSH6P52701 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
MSH6P52701 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC8.58□□□□□ -1.04
MSH6P52701 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC8.58□□□□□ -1.04
MSH6P52701 IGF1-206ENST00000456098 7370 ntTSL 5 BASIC8.58□□□□□ -1.04
MSH6P52701 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC8.58□□□□□ -1.04
MSH6P52701 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC8.58□□□□□ -1.04
MSH6P52701 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
MSH6P52701 NAA15-208ENST00000515576 2456 ntTSL 2 BASIC8.58□□□□□ -1.04
MSH6P52701 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC8.58□□□□□ -1.04
MSH6P52701 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
MSH6P52701 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC8.58□□□□□ -1.04
MSH6P52701 RN7SKP59-201ENST00000410520 314 ntBASIC8.58□□□□□ -1.04
MSH6P52701 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC8.58□□□□□ -1.04
MSH6P52701 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC8.58□□□□□ -1.04
MSH6P52701 ZNF619P1-201ENST00000446539 752 ntBASIC8.58□□□□□ -1.04
MSH6P52701 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC8.58□□□□□ -1.04
MSH6P52701 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC8.58□□□□□ -1.04
MSH6P52701 GAPDHP71-201ENST00000511530 1003 ntBASIC8.58□□□□□ -1.04
MSH6P52701 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC8.58□□□□□ -1.04
MSH6P52701 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC8.58□□□□□ -1.04
MSH6P52701 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC8.58□□□□□ -1.04
MSH6P52701 AC005393.1-201ENST00000617916 584 ntBASIC8.58□□□□□ -1.04
MSH6P52701 BCL2L14-201ENST00000266434 2039 ntTSL 1 (best) BASIC8.58□□□□□ -1.04
MSH6P52701 Z93929.1-201ENST00000418200 1475 ntBASIC8.58□□□□□ -1.04
MSH6P52701 LARS-212ENST00000510191 3737 ntTSL 2 BASIC8.58□□□□□ -1.04
MSH6P52701 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.04
MSH6P52701 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
MSH6P52701 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC8.57□□□□□ -1.04
MSH6P52701 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
MSH6P52701 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
MSH6P52701 MAPK10-365ENST00000641902 3825 ntBASIC8.57□□□□□ -1.04
MSH6P52701 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
MSH6P52701 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
MSH6P52701 NCOA4P3-201ENST00000513203 1877 ntBASIC8.57□□□□□ -1.04
MSH6P52701 AC007485.2-201ENST00000623493 1667 ntBASIC8.57□□□□□ -1.04
MSH6P52701 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
MSH6P52701 AC007386.1-201ENST00000455212 582 ntBASIC8.57□□□□□ -1.04
MSH6P52701 AC004815.1-201ENST00000484185 331 ntBASIC8.57□□□□□ -1.04
MSH6P52701 RN7SL561P-201ENST00000488553 281 ntBASIC8.57□□□□□ -1.04
MSH6P52701 NENFP3-201ENST00000503735 313 ntBASIC8.57□□□□□ -1.04
MSH6P52701 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC8.57□□□□□ -1.04
MSH6P52701 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC8.57□□□□□ -1.04
MSH6P52701 AC092375.1-201ENST00000550410 637 ntBASIC8.57□□□□□ -1.04
MSH6P52701 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC8.57□□□□□ -1.04
MSH6P52701 AL008723.3-201ENST00000608926 449 ntBASIC8.57□□□□□ -1.04
MSH6P52701 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC8.57□□□□□ -1.04
MSH6P52701 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC8.57□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms