Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 AC009229.1-201ENST00000450854 622 ntTSL 4 BASIC7.12□□□□□ -1.27
COL8A1P27658 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 TCEAL4P1-201ENST00000453620 588 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 MTND1P9-201ENST00000453775 944 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 RN7SL58P-201ENST00000473445 294 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 DKK2-202ENST00000510463 908 ntTSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 AC010587.2-201ENST00000511727 448 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 RPS23-208ENST00000512493 443 ntTSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC7.12□□□□□ -1.27
COL8A1P27658 AP002453.2-201ENST00000533503 320 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 NUTF2P2-201ENST00000551207 384 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 AL049869.4-201ENST00000555669 178 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 LINC01588-211ENST00000556434 892 ntTSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 AC020661.2-201ENST00000560114 134 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 AC015909.4-201ENST00000577175 578 ntTSL 4 BASIC7.12□□□□□ -1.27
COL8A1P27658 OR4K7P-201ENST00000580232 945 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC7.12□□□□□ -1.27
COL8A1P27658 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 RPL27-207ENST00000590864 569 ntTSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 BNIP3P8-201ENST00000597863 560 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AC005034.2-201ENST00000604464 414 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 MIR8082-201ENST00000612488 81 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 PART1_3.1-201ENST00000619680 131 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AL138693.1-201ENST00000622219 129 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 ABBA01000935.2-201ENST00000637477 838 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 LINC01739-205ENST00000641890 573 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 AC008966.1-203ENST00000499459 3137 ntTSL 2 BASIC7.12□□□□□ -1.27
COL8A1P27658 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 GOSR2-240ENST00000640621 3059 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 IGSF22-205ENST00000513874 4284 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 FBXO38-203ENST00000394370 4132 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 AL135818.1-202ENST00000554096 1740 ntTSL 3 BASIC7.12□□□□□ -1.27
COL8A1P27658 TTC39DP-201ENST00000416781 1688 ntBASIC7.12□□□□□ -1.27
COL8A1P27658 STAU2-226ENST00000524104 2173 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 CHD6-201ENST00000309279 1635 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 AP003066.1-201ENST00000527528 1647 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 PAX6-259ENST00000639916 2622 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 AL031676.1-201ENST00000412519 1586 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 UAP1-202ENST00000367924 2066 ntAPPRIS ALT1 TSL 5 BASIC7.12□□□□□ -1.27
COL8A1P27658 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
COL8A1P27658 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 LRP4-AS1-201ENST00000502049 1504 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 AC010200.1-201ENST00000547380 1454 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 MARK2P10-201ENST00000454959 1437 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 PPARGC1A-206ENST00000507380 2385 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 ZBTB14-207ENST00000614697 3341 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 GLULP5-201ENST00000547831 1390 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 ZNF35-202ENST00000396056 2661 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 AL049839.2-201ENST00000553947 3067 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 PCBP1-AS1-230ENST00000439670 2180 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC7.11□□□□□ -1.27
COL8A1P27658 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
COL8A1P27658 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
COL8A1P27658 FAM177B-201ENST00000360827 764 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 Y_RNA.145-201ENST00000363527 102 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 RNU6-1090P-201ENST00000364065 94 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 SNORA51.2-201ENST00000364595 132 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 SNORD86-201ENST00000391196 86 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 RPS27-202ENST00000392558 625 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 RAB5CP1-201ENST00000395972 580 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 GAS8-AS1-201ENST00000408886 435 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AGBL5-IT1-201ENST00000411862 339 ntTSL 3 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC009228.1-201ENST00000413254 240 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 AL157698.1-201ENST00000415190 1011 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 RPS3AP9-201ENST00000417027 792 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 RPSAP1-201ENST00000421328 880 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
COL8A1P27658 RPL31P54-201ENST00000429803 370 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC7.11□□□□□ -1.27
COL8A1P27658 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 ACTR3P2-201ENST00000439585 1257 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC7.11□□□□□ -1.27
COL8A1P27658 AC239860.1-201ENST00000444680 1270 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 RPSAP49-201ENST00000445182 886 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC239798.1-201ENST00000449024 1176 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 OR51B8P-201ENST00000449892 769 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 OR52Y1P-201ENST00000452418 828 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 AC012501.1-201ENST00000454312 555 ntTSL 4 BASIC7.11□□□□□ -1.27
COL8A1P27658 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
COL8A1P27658 RPS18P13-201ENST00000461260 454 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 RN7SL761P-201ENST00000463259 278 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 CTLA4-204ENST00000472206 277 ntTSL 1 (best) BASIC7.11□□□□□ -1.27
COL8A1P27658 PGBD4P1-201ENST00000473644 407 ntBASIC7.11□□□□□ -1.27
COL8A1P27658 TMED10P2-201ENST00000474255 612 ntBASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms