Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.85□□□□□ -1.47
SDC1P18827 TPM3P3-201ENST00000521343 354 ntBASIC5.85□□□□□ -1.47
SDC1P18827 AC244502.2-201ENST00000543361 851 ntBASIC5.85□□□□□ -1.47
SDC1P18827 AC105036.1-201ENST00000566222 271 ntBASIC5.85□□□□□ -1.47
SDC1P18827 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC5.85□□□□□ -1.47
SDC1P18827 AC063977.7-201ENST00000594454 337 ntBASIC5.85□□□□□ -1.47
SDC1P18827 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.85□□□□□ -1.47
SDC1P18827 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC5.85□□□□□ -1.47
SDC1P18827 AC141002.1-201ENST00000607025 279 ntBASIC5.85□□□□□ -1.47
SDC1P18827 PCA3_2.1-201ENST00000612507 409 ntBASIC5.85□□□□□ -1.47
SDC1P18827 RN7SL261P-201ENST00000613441 282 ntBASIC5.85□□□□□ -1.47
SDC1P18827 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC5.85□□□□□ -1.47
SDC1P18827 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.85□□□□□ -1.47
SDC1P18827 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC5.85□□□□□ -1.47
SDC1P18827 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.85□□□□□ -1.47
SDC1P18827 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 AP003486.1-201ENST00000525716 3994 ntBASIC5.85□□□□□ -1.47
SDC1P18827 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 AC011416.1-201ENST00000514947 1732 ntBASIC5.85□□□□□ -1.47
SDC1P18827 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.85□□□□□ -1.47
SDC1P18827 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
SDC1P18827 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC5.84□□□□□ -1.47
SDC1P18827 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.84□□□□□ -1.47
SDC1P18827 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
SDC1P18827 SNORA64.3-201ENST00000365647 134 ntBASIC5.84□□□□□ -1.47
SDC1P18827 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 PTCD2P2-201ENST00000415579 1095 ntBASIC5.84□□□□□ -1.47
SDC1P18827 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC5.84□□□□□ -1.47
SDC1P18827 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.84□□□□□ -1.47
SDC1P18827 RPEP4-201ENST00000437636 602 ntBASIC5.84□□□□□ -1.47
SDC1P18827 AL512593.1-201ENST00000444758 779 ntBASIC5.84□□□□□ -1.47
SDC1P18827 RPL23AP60-201ENST00000450011 454 ntBASIC5.84□□□□□ -1.47
SDC1P18827 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 RN7SL393P-201ENST00000463588 296 ntBASIC5.84□□□□□ -1.47
SDC1P18827 RN7SL352P-201ENST00000466002 277 ntBASIC5.84□□□□□ -1.47
SDC1P18827 RPS4XP17-201ENST00000479057 754 ntBASIC5.84□□□□□ -1.47
SDC1P18827 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.84□□□□□ -1.47
SDC1P18827 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
SDC1P18827 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.84□□□□□ -1.47
SDC1P18827 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC5.84□□□□□ -1.47
SDC1P18827 AC089999.3-201ENST00000622440 577 ntBASIC5.84□□□□□ -1.47
SDC1P18827 COPS7B-225ENST00000631349 189 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC5.84□□□□□ -1.47
SDC1P18827 AC007159.1-201ENST00000566529 4706 ntBASIC5.84□□□□□ -1.47
SDC1P18827 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
SDC1P18827 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.84□□□□□ -1.47
SDC1P18827 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.84□□□□□ -1.47
SDC1P18827 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
SDC1P18827 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.84□□□□□ -1.48
SDC1P18827 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SDC1P18827 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC5.84□□□□□ -1.48
SDC1P18827 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
SDC1P18827 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.84□□□□□ -1.48
SDC1P18827 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
SDC1P18827 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
SDC1P18827 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.83□□□□□ -1.48
SDC1P18827 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.83□□□□□ -1.48
SDC1P18827 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.83□□□□□ -1.48
SDC1P18827 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.83□□□□□ -1.48
SDC1P18827 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 AC016583.1-201ENST00000624221 2431 ntBASIC5.83□□□□□ -1.48
SDC1P18827 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.83□□□□□ -1.48
SDC1P18827 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SDC1P18827 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.83□□□□□ -1.48
SDC1P18827 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC5.83□□□□□ -1.48
SDC1P18827 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
SDC1P18827 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
SDC1P18827 AC092651.1-201ENST00000426110 312 ntBASIC5.83□□□□□ -1.48
SDC1P18827 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC5.83□□□□□ -1.48
SDC1P18827 GAPDHP19-201ENST00000431768 1005 ntBASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms