Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC009704.2-201ENST00000618739 483 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 TNPO1P2-201ENST00000426249 2665 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC009804.1-201ENST00000400949 179 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 HMGA1P8-201ENST00000414130 321 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 ATP5J2P6-201ENST00000565203 266 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 AC010976.1-205ENST00000596439 1007 ntTSL 5 BASIC5.81□□□□□ -1.48
VPS13AQ96RL7 OR7A11P-201ENST00000597719 953 ntBASIC5.81□□□□□ -1.48
VPS13AQ96RL7 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AC007485.2-201ENST00000623493 1667 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 RPS16P5-201ENST00000406501 404 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AC019185.1-201ENST00000442718 389 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AC016027.4-201ENST00000450866 277 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AC026826.1-201ENST00000493002 361 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AC147055.3-201ENST00000510547 851 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AC119403.2-201ENST00000590960 598 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 NWD1-205ENST00000549814 6614 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AFG1L-201ENST00000368977 5208 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 RPS3AP53-201ENST00000454716 778 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 RN7SL57P-201ENST00000493687 290 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 OR11H2-202ENST00000641517 1085 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 PRDM10-201ENST00000304538 5817 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 DMBT1-203ENST00000344338 7656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 DMBT1-205ENST00000368955 7656 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.8□□□□□ -1.48
VPS13AQ96RL7 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 KANK1-205ENST00000382297 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
VPS13AQ96RL7 RNU1-32P-201ENST00000363937 159 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AL035419.1-201ENST00000397037 564 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 USP9YP9-201ENST00000429406 715 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC245047.5-201ENST00000437312 556 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC022215.1-201ENST00000481770 362 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC105114.1-201ENST00000624795 1862 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 GTF2IP4-201ENST00000453092 2054 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC023824.7-201ENST00000623041 5731 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 FANCM-202ENST00000542564 6167 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 SH3GLB1-201ENST00000370558 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC016251.2-201ENST00000623393 3089 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 OR52B5P-201ENST00000435337 951 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC004129.2-201ENST00000457229 287 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 RN7SL817P-201ENST00000480777 288 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 OR7E157P-201ENST00000494376 911 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 HTATIP2-207ENST00000532081 774 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.79□□□□□ -1.48
VPS13AQ96RL7 BNIP3P1-201ENST00000547295 580 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 IGBP1P1-201ENST00000554337 1009 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AP002505.2-201ENST00000623585 696 ntBASIC5.79□□□□□ -1.48
VPS13AQ96RL7 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms