Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 AL353743.3-201ENST00000442109 1468 ntBASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.22□□□□□ -1.41
CCDC3Q9BQI4 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC3Q9BQI4 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC3Q9BQI4 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
CCDC3Q9BQI4 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 MAPK10-323ENST00000641493 3207 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RN7SKP108-201ENST00000411367 328 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 C9orf147-201ENST00000412934 584 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RPS21P8-201ENST00000413365 247 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC018638.3-201ENST00000461273 132 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RN7SL104P-201ENST00000498686 293 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RBBP4P1-201ENST00000502424 1276 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC091965.3-201ENST00000506236 208 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 MRPS21P8-201ENST00000569196 235 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RN7SL475P-201ENST00000583379 298 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 BTK-209ENST00000618050 2417 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 CDY10P-201ENST00000452415 1567 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AP001157.1-201ENST00000550837 2339 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 SAGE3P-201ENST00000619800 1635 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 AC006213.6-201ENST00000623722 4179 ntBASIC6.21□□□□□ -1.42
CCDC3Q9BQI4 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 LYARP1-201ENST00000436977 1501 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AL359976.1-201ENST00000418655 3528 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 LPAL2-203ENST00000454031 2498 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 MAPK10-344ENST00000641718 3746 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC125238.2-201ENST00000430003 1440 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC093225.1-201ENST00000506867 1408 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 OR52N5-201ENST00000317093 1034 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 SNORD16-201ENST00000362803 99 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 RNA5SP188-201ENST00000362916 129 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AL157884.1-201ENST00000424561 454 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC112492.2-201ENST00000432774 1030 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 RPL6P30-201ENST00000443382 862 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 RPL23AP64-201ENST00000469465 435 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC095052.1-201ENST00000509955 863 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 RN7SKP35-201ENST00000517210 151 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC036111.2-201ENST00000533247 901 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 CYCSP38-201ENST00000559840 322 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AL132640.3-201ENST00000630473 177 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 OR7E91P-202ENST00000642062 1198 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 AC092821.3-202ENST00000641304 2767 ntBASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
CCDC3Q9BQI4 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms