Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC3.62□□□□□ -1.83
HSPG2P98160 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.62□□□□□ -1.83
HSPG2P98160 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC3.62□□□□□ -1.83
HSPG2P98160 AP000919.1-201ENST00000582850 985 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 AC109583.2-201ENST00000617367 129 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 ZNF471-201ENST00000308031 6287 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 AL662795.2-201ENST00000624252 3706 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 LIN54-202ENST00000442461 4254 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 OR4Q3-202ENST00000642117 2165 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HSPG2P98160 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 PBRM1-205ENST00000409057 4980 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 TAF1L-201ENST00000242310 6216 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HSPG2P98160 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 OR4K12P-201ENST00000406538 961 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC3.62□□□□□ -1.83
HSPG2P98160 ZDHHC20P1-204ENST00000435787 423 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HSPG2P98160 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 AP002799.1-201ENST00000623552 423 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 CYP4F35P-202ENST00000636121 390 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 MTHFD1-202ENST00000545908 6814 ntTSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 AL357153.1-201ENST00000500016 2941 ntTSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 SELE-203ENST00000367775 3389 ntTSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 RPEL1-201ENST00000441178 2130 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HSPG2P98160 KYNUP3-201ENST00000574386 1341 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 COL4A6-202ENST00000372216 6570 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HSPG2P98160 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 AC026979.1-201ENST00000492525 396 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 SLC25A15P5-201ENST00000508033 253 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC3.62□□□□□ -1.83
HSPG2P98160 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 AC010857.1-201ENST00000606398 594 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC3.62□□□□□ -1.83
HSPG2P98160 KIAA0319-202ENST00000430948 6620 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 PANDAR-201ENST00000629595 1506 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 NAV2-201ENST00000349880 10960 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HSPG2P98160 RN7SKP23-201ENST00000625159 4301 ntBASIC3.62□□□□□ -1.83
HSPG2P98160 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC3.62□□□□□ -1.83
HSPG2P98160 AGPAT4-201ENST00000320285 7865 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HSPG2P98160 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HSPG2P98160 PLEKHA6-201ENST00000272203 7401 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 DNAJC27-AS1-205ENST00000434897 4660 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 ACAN-206ENST00000559004 7628 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
HSPG2P98160 AGPAT4-203ENST00000366911 7705 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HSPG2P98160 RPL23P2-201ENST00000320371 421 ntBASIC3.61□□□□□ -1.83
HSPG2P98160 CRP-204ENST00000368112 787 ntTSL 2 BASIC3.61□□□□□ -1.83
HSPG2P98160 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 ATP5A1P7-201ENST00000453978 1279 ntBASIC3.61□□□□□ -1.83
HSPG2P98160 NDUFA5P9-201ENST00000472609 340 ntBASIC3.61□□□□□ -1.83
HSPG2P98160 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC3.61□□□□□ -1.83
HSPG2P98160 GTF2IP4-201ENST00000453092 2054 ntBASIC3.61□□□□□ -1.83
HSPG2P98160 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC3.61□□□□□ -1.83
HSPG2P98160 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 DPYSL2-201ENST00000311151 4603 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC3.61□□□□□ -1.83
HSPG2P98160 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC3.61□□□□□ -1.83
HSPG2P98160 DHFR2-202ENST00000394221 4038 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 KCNMB3P1-202ENST00000493696 3389 ntBASIC3.61□□□□□ -1.83
HSPG2P98160 BTBD3-215ENST00000618918 4486 ntAPPRIS ALT1 TSL 4 BASIC3.61□□□□□ -1.83
HSPG2P98160 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
HSPG2P98160 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC3.61□□□□□ -1.83
HSPG2P98160 AC009962.1-201ENST00000567327 3813 ntBASIC3.61□□□□□ -1.83
HSPG2P98160 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
HSPG2P98160 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
HSPG2P98160 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HSPG2P98160 SNURFL-201ENST00000309296 343 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms