Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC008837.1-201ENST00000511513 412 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC7.56□□□□□ -1.2
LIG3P49916 AC092593.2-201ENST00000513866 913 ntBASIC7.56□□□□□ -1.2
LIG3P49916 RN7SKP34-201ENST00000516142 244 ntBASIC7.56□□□□□ -1.2
LIG3P49916 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 AC104417.1-201ENST00000523974 751 ntBASIC7.56□□□□□ -1.2
LIG3P49916 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 AC084824.1-201ENST00000550917 1005 ntBASIC7.56□□□□□ -1.2
LIG3P49916 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 SETP1-201ENST00000556014 845 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC7.56□□□□□ -1.2
LIG3P49916 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 OR5AH1P-201ENST00000595968 283 ntBASIC7.56□□□□□ -1.2
LIG3P49916 DPRXP5-201ENST00000604662 539 ntBASIC7.56□□□□□ -1.2
LIG3P49916 AC018638.7-201ENST00000605836 1114 ntBASIC7.56□□□□□ -1.2
LIG3P49916 FAM27E3-202ENST00000614611 340 ntBASIC7.56□□□□□ -1.2
LIG3P49916 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC7.56□□□□□ -1.2
LIG3P49916 AL353747.4-202ENST00000625787 674 ntTSL 3 BASIC7.56□□□□□ -1.2
LIG3P49916 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.56□□□□□ -1.2
LIG3P49916 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC7.56□□□□□ -1.2
LIG3P49916 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC7.56□□□□□ -1.2
LIG3P49916 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC7.56□□□□□ -1.2
LIG3P49916 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
LIG3P49916 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC7.56□□□□□ -1.2
LIG3P49916 AC132825.1-201ENST00000463573 2247 ntBASIC7.56□□□□□ -1.2
LIG3P49916 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC7.56□□□□□ -1.2
LIG3P49916 SAMM50P1-201ENST00000455403 1399 ntBASIC7.56□□□□□ -1.2
LIG3P49916 CUBNP3-201ENST00000457461 1784 ntBASIC7.56□□□□□ -1.2
LIG3P49916 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC7.56□□□□□ -1.2
LIG3P49916 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 AP3M1-201ENST00000355264 5124 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
LIG3P49916 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 CRISPLD1-202ENST00000517786 1964 ntTSL 2 BASIC7.55□□□□□ -1.2
LIG3P49916 HEATR9-207ENST00000604834 1974 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 SOCS5P5-201ENST00000402732 1586 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 TTC33-207ENST00000637375 1824 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 AL133268.1-201ENST00000405676 1401 ntBASIC7.55□□□□□ -1.2
LIG3P49916 HYKK-205ENST00000566332 1422 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 UBE2Q2P1-202ENST00000354771 883 ntBASIC7.55□□□□□ -1.2
LIG3P49916 RNU6-623P-201ENST00000363143 105 ntBASIC7.55□□□□□ -1.2
LIG3P49916 RN7SKP211-201ENST00000363328 315 ntBASIC7.55□□□□□ -1.2
LIG3P49916 RNU6-224P-201ENST00000384055 107 ntBASIC7.55□□□□□ -1.2
LIG3P49916 Y_RNA.472-201ENST00000384322 102 ntBASIC7.55□□□□□ -1.2
LIG3P49916 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 DNASE1L3-201ENST00000394549 1294 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 AC113608.1-201ENST00000398740 305 ntBASIC7.55□□□□□ -1.2
LIG3P49916 NUS1P4-201ENST00000401550 585 ntBASIC7.55□□□□□ -1.2
LIG3P49916 SNORA2C-201ENST00000408564 137 ntBASIC7.55□□□□□ -1.2
LIG3P49916 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC7.55□□□□□ -1.2
LIG3P49916 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 GAS5-211ENST00000432536 959 ntTSL 2 BASIC7.55□□□□□ -1.2
LIG3P49916 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC7.55□□□□□ -1.2
LIG3P49916 RPL21P33-201ENST00000444831 484 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AC114755.1-201ENST00000453101 868 ntBASIC7.55□□□□□ -1.2
LIG3P49916 CST12P-201ENST00000457644 362 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AC004890.1-201ENST00000461005 181 ntBASIC7.55□□□□□ -1.2
LIG3P49916 TAAR3P-201ENST00000466706 1078 ntBASIC7.55□□□□□ -1.2
LIG3P49916 TAAR3P-202ENST00000481759 1025 ntBASIC7.55□□□□□ -1.2
LIG3P49916 RN7SL332P-201ENST00000482163 254 ntBASIC7.55□□□□□ -1.2
LIG3P49916 RN7SL516P-201ENST00000496127 297 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AC097263.1-201ENST00000496795 606 ntBASIC7.55□□□□□ -1.2
LIG3P49916 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC7.55□□□□□ -1.2
LIG3P49916 RPF2P2-201ENST00000504693 896 ntBASIC7.55□□□□□ -1.2
LIG3P49916 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC7.55□□□□□ -1.2
LIG3P49916 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC7.55□□□□□ -1.2
LIG3P49916 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
LIG3P49916 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC7.55□□□□□ -1.2
LIG3P49916 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC7.55□□□□□ -1.2
LIG3P49916 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC7.55□□□□□ -1.2
LIG3P49916 COX6CP11-201ENST00000555293 229 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC7.55□□□□□ -1.2
LIG3P49916 AL132640.1-201ENST00000559594 619 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AC018558.5-201ENST00000565840 952 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC7.55□□□□□ -1.2
LIG3P49916 MTND4LP24-201ENST00000572277 291 ntBASIC7.55□□□□□ -1.2
LIG3P49916 RN7SL622P-201ENST00000585292 275 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC7.55□□□□□ -1.2
LIG3P49916 AL390058.1-201ENST00000603834 629 ntBASIC7.55□□□□□ -1.2
LIG3P49916 HNRNPA1P67-201ENST00000604027 926 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AL022238.3-201ENST00000609279 443 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AC006335.3-201ENST00000613408 292 ntBASIC7.55□□□□□ -1.2
LIG3P49916 AL049536.1-201ENST00000625043 744 ntBASIC7.55□□□□□ -1.2
LIG3P49916 HBG1-202ENST00000632727 369 ntTSL 3 BASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms