Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC10.59□□□□□ -0.71
CUX2O14529 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC10.59□□□□□ -0.71
CUX2O14529 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC10.59□□□□□ -0.71
CUX2O14529 AC137768.1-201ENST00000549998 553 ntBASIC10.59□□□□□ -0.71
CUX2O14529 AC018558.5-201ENST00000565840 952 ntBASIC10.59□□□□□ -0.71
CUX2O14529 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC10.59□□□□□ -0.71
CUX2O14529 AL049840.6-201ENST00000604583 345 ntBASIC10.59□□□□□ -0.71
CUX2O14529 OR1N1-202ENST00000619659 939 ntBASIC10.59□□□□□ -0.71
CUX2O14529 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC10.59□□□□□ -0.71
CUX2O14529 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX2O14529 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC10.59□□□□□ -0.71
CUX2O14529 ZNF462-204ENST00000441147 4691 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CUX2O14529 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CUX2O14529 NLRP4-203ENST00000587891 3201 ntTSL 2 BASIC10.59□□□□□ -0.71
CUX2O14529 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
CUX2O14529 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC10.59□□□□□ -0.71
CUX2O14529 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC10.59□□□□□ -0.71
CUX2O14529 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX2O14529 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CUX2O14529 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC10.58□□□□□ -0.72
CUX2O14529 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
CUX2O14529 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC10.58□□□□□ -0.72
CUX2O14529 MIR765-201ENST00000390226 114 ntBASIC10.58□□□□□ -0.72
CUX2O14529 AK4P4-201ENST00000419465 646 ntBASIC10.58□□□□□ -0.72
CUX2O14529 NME1P1-201ENST00000420914 382 ntBASIC10.58□□□□□ -0.72
CUX2O14529 AL662874.1-201ENST00000426065 230 ntBASIC10.58□□□□□ -0.72
CUX2O14529 NEK2P2-201ENST00000438441 1338 ntBASIC10.58□□□□□ -0.72
CUX2O14529 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC10.58□□□□□ -0.72
CUX2O14529 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC10.58□□□□□ -0.72
CUX2O14529 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX2O14529 AC087763.1-201ENST00000603391 286 ntBASIC10.58□□□□□ -0.72
CUX2O14529 ZC3H11B-202ENST00000636126 4432 ntAPPRIS ALT1 TSL 2 BASIC10.58□□□□□ -0.72
CUX2O14529 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX2O14529 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
CUX2O14529 EYA3-208ENST00000540618 5885 ntTSL 2 BASIC10.58□□□□□ -0.72
CUX2O14529 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC10.58□□□□□ -0.72
CUX2O14529 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
CUX2O14529 AC022325.1-201ENST00000502748 2199 ntBASIC10.58□□□□□ -0.72
CUX2O14529 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC10.57□□□□□ -0.72
CUX2O14529 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC10.57□□□□□ -0.72
CUX2O14529 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC10.57□□□□□ -0.72
CUX2O14529 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 RPL35AP3-201ENST00000414680 288 ntBASIC10.57□□□□□ -0.72
CUX2O14529 RPL35AP31-201ENST00000418340 337 ntBASIC10.57□□□□□ -0.72
CUX2O14529 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC10.57□□□□□ -0.72
CUX2O14529 RN7SL583P-201ENST00000475692 287 ntBASIC10.57□□□□□ -0.72
CUX2O14529 AC117395.1-201ENST00000487390 403 ntBASIC10.57□□□□□ -0.72
CUX2O14529 AC109481.1-201ENST00000509173 282 ntBASIC10.57□□□□□ -0.72
CUX2O14529 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC10.57□□□□□ -0.72
CUX2O14529 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC10.57□□□□□ -0.72
CUX2O14529 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC10.57□□□□□ -0.72
CUX2O14529 AL445528.2-201ENST00000620582 470 ntBASIC10.57□□□□□ -0.72
CUX2O14529 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 AL590004.4-201ENST00000566733 7060 ntBASIC10.57□□□□□ -0.72
CUX2O14529 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 TP53BP1-203ENST00000382044 10384 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.72
CUX2O14529 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX2O14529 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX2O14529 CASC19-248ENST00000641674 1356 ntBASIC10.56□□□□□ -0.72
CUX2O14529 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX2O14529 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC10.56□□□□□ -0.72
CUX2O14529 RNA5SP234-201ENST00000363916 119 ntBASIC10.56□□□□□ -0.72
CUX2O14529 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC10.56□□□□□ -0.72
CUX2O14529 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC10.56□□□□□ -0.72
CUX2O14529 AC006466.1-201ENST00000438721 289 ntBASIC10.56□□□□□ -0.72
CUX2O14529 MTCYBP21-201ENST00000443300 1113 ntBASIC10.56□□□□□ -0.72
CUX2O14529 AURKAPS1-201ENST00000451805 1212 ntBASIC10.56□□□□□ -0.72
CUX2O14529 AC021074.2-201ENST00000468434 172 ntBASIC10.56□□□□□ -0.72
CUX2O14529 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC10.56□□□□□ -0.72
CUX2O14529 AP001922.4-201ENST00000526967 290 ntBASIC10.56□□□□□ -0.72
CUX2O14529 AC022106.1-201ENST00000612834 766 ntBASIC10.56□□□□□ -0.72
CUX2O14529 AL359513.1-201ENST00000614364 557 ntBASIC10.56□□□□□ -0.72
CUX2O14529 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX2O14529 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC10.56□□□□□ -0.72
CUX2O14529 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC10.56□□□□□ -0.72
CUX2O14529 AC007998.4-201ENST00000612496 2533 ntBASIC10.56□□□□□ -0.72
CUX2O14529 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC10.56□□□□□ -0.72
CUX2O14529 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX2O14529 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC10.56□□□□□ -0.72
CUX2O14529 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC10.56□□□□□ -0.72
CUX2O14529 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC10.56□□□□□ -0.72
CUX2O14529 AC135068.1-201ENST00000332663 1084 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
CUX2O14529 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
CUX2O14529 AC096537.2-201ENST00000413707 714 ntBASIC10.55□□□□□ -0.72
CUX2O14529 RPL35AP24-201ENST00000413846 330 ntBASIC10.55□□□□□ -0.72
CUX2O14529 HMGA1P8-201ENST00000414130 321 ntBASIC10.55□□□□□ -0.72
CUX2O14529 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC10.55□□□□□ -0.72
CUX2O14529 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC10.55□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms