Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AC022905.1-201ENST00000503430 3048 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 FP325330.3-201ENST00000623760 9537 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AP000547.1-201ENST00000454360 617 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AL450226.2-201ENST00000622913 439 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 AL356317.1-201ENST00000396110 1436 ntBASIC5.85□□□□□ -1.47
VPS13AQ96RL7 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 COL12A1-201ENST00000322507 11723 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 RPEL1-201ENST00000441178 2130 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS13AQ96RL7 MYO7B-202ENST00000409816 6694 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC079753.1-201ENST00000623243 3868 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 ATP1A2-201ENST00000361216 5421 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 ARHGAP19-201ENST00000358308 5390 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 RPL5P5-201ENST00000392009 893 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC126120.1-201ENST00000431082 470 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AL161722.1-201ENST00000446972 1032 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 RPL5P9-201ENST00000448118 886 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC109481.1-201ENST00000509173 282 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 BRD9P1-201ENST00000529855 560 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC010245.2-201ENST00000606908 1167 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 RIMS1-219ENST00000523963 3097 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 FO393409.1-201ENST00000399325 1372 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 DHX32-202ENST00000368721 2389 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 SEPSECS-202ENST00000382103 5496 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC011592.1-201ENST00000624647 3634 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 LRRC37A17P-201ENST00000570311 4693 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC096537.2-201ENST00000413707 714 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 NMD3P2-201ENST00000421815 761 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AL121579.2-201ENST00000555466 590 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 LINC01739-205ENST00000641890 573 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS13AQ96RL7 ACTR3C-206ENST00000613959 5142 ntBASIC5.84□□□□□ -1.47
VPS13AQ96RL7 ITGA11-202ENST00000423218 10192 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.48
VPS13AQ96RL7 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
VPS13AQ96RL7 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.84□□□□□ -1.48
VPS13AQ96RL7 YES1P1-201ENST00000418510 1628 ntBASIC5.84□□□□□ -1.48
VPS13AQ96RL7 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
VPS13AQ96RL7 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
VPS13AQ96RL7 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AC008897.1-201ENST00000494006 347 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 SIPA1L1-211ENST00000555818 7831 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 XDH-201ENST00000379416 5688 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AC131971.1-201ENST00000332881 1482 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AL445928.1-201ENST00000435545 222 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 CEACAMP7-201ENST00000444105 496 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 PRELID3BP5-201ENST00000508612 460 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AL445528.2-201ENST00000620582 470 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AC002090.1-201ENST00000625000 2138 ntBASIC5.83□□□□□ -1.48
VPS13AQ96RL7 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms