Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 AL133399.1-201ENST00000527476 298 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SKA3Q8IX90 AC037479.1-201ENST00000558361 625 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 SRP14-AS1-203ENST00000560341 669 ntTSL 2 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 AC023968.1-201ENST00000560719 475 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 AC090616.1-201ENST00000583895 447 ntBASIC5.65□□□□□ -1.5
SKA3Q8IX90 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.5
SKA3Q8IX90 AC093671.1-201ENST00000624981 2929 ntBASIC5.65□□□□□ -1.51
SKA3Q8IX90 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
SKA3Q8IX90 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 EEF1A1P24-201ENST00000451469 1378 ntBASIC5.65□□□□□ -1.51
SKA3Q8IX90 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.65□□□□□ -1.51
SKA3Q8IX90 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SKA3Q8IX90 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SKA3Q8IX90 CAP1P2-201ENST00000417455 1409 ntBASIC5.65□□□□□ -1.51
SKA3Q8IX90 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
SKA3Q8IX90 AL353743.3-201ENST00000442109 1468 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 GPN3P1-201ENST00000423883 535 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 RPL12P49-201ENST00000441100 121 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 AL356121.1-201ENST00000442911 156 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 CEACAMP11-201ENST00000455211 583 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 RBMY2HP-201ENST00000457961 720 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 SNRPCP11-201ENST00000492453 205 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 RPL41P2-201ENST00000544920 409 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 TPRX1P1-201ENST00000557620 319 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC022021.1-201ENST00000634334 843 ntTSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AC007603.3-201ENST00000636915 979 ntBASIC5.64□□□□□ -1.51
SKA3Q8IX90 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC5.64□□□□□ -1.51
SKA3Q8IX90 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SKA3Q8IX90 AL157831.2-201ENST00000564681 3095 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC140134.1-201ENST00000511830 3544 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC105235.1-201ENST00000623208 1816 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SKA3Q8IX90 RNU6-233P-201ENST00000410845 141 ntBASIC5.63□□□□□ -1.51
SKA3Q8IX90 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.63□□□□□ -1.51
SKA3Q8IX90 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms