Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
NUP98P52948 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.57□□□□□ -1.2
NUP98P52948 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC7.57□□□□□ -1.2
NUP98P52948 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.57□□□□□ -1.2
NUP98P52948 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 RN7SKP293-201ENST00000411389 296 ntBASIC7.57□□□□□ -1.2
NUP98P52948 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC7.57□□□□□ -1.2
NUP98P52948 VN1R110P-201ENST00000438988 971 ntBASIC7.57□□□□□ -1.2
NUP98P52948 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC7.57□□□□□ -1.2
NUP98P52948 SEPT14P12-201ENST00000442280 560 ntBASIC7.57□□□□□ -1.2
NUP98P52948 AC073909.1-201ENST00000447112 999 ntBASIC7.57□□□□□ -1.2
NUP98P52948 NPM1P19-201ENST00000450070 712 ntBASIC7.57□□□□□ -1.2
NUP98P52948 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC7.57□□□□□ -1.2
NUP98P52948 RPSAP37-201ENST00000470913 821 ntBASIC7.57□□□□□ -1.2
NUP98P52948 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC7.57□□□□□ -1.2
NUP98P52948 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC7.57□□□□□ -1.2
NUP98P52948 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.57□□□□□ -1.2
NUP98P52948 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.56□□□□□ -1.2
NUP98P52948 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
NUP98P52948 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 AC005618.1-201ENST00000606901 3148 ntBASIC7.56□□□□□ -1.2
NUP98P52948 AL355433.1-201ENST00000422804 300 ntBASIC7.56□□□□□ -1.2
NUP98P52948 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.56□□□□□ -1.2
NUP98P52948 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC7.56□□□□□ -1.2
NUP98P52948 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC7.56□□□□□ -1.2
NUP98P52948 RN7SL165P-201ENST00000477476 291 ntBASIC7.56□□□□□ -1.2
NUP98P52948 RN7SL629P-201ENST00000489622 285 ntBASIC7.56□□□□□ -1.2
NUP98P52948 AC008638.1-201ENST00000506035 866 ntBASIC7.56□□□□□ -1.2
NUP98P52948 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC7.56□□□□□ -1.2
NUP98P52948 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC7.56□□□□□ -1.2
NUP98P52948 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 AC005244.1-201ENST00000582566 339 ntBASIC7.56□□□□□ -1.2
NUP98P52948 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC7.56□□□□□ -1.2
NUP98P52948 MIR4443-201ENST00000585052 53 ntBASIC7.56□□□□□ -1.2
NUP98P52948 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 AC024255.1-201ENST00000614376 102 ntBASIC7.56□□□□□ -1.2
NUP98P52948 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC7.56□□□□□ -1.2
NUP98P52948 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
NUP98P52948 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC7.56□□□□□ -1.2
NUP98P52948 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC7.55□□□□□ -1.2
NUP98P52948 AL157831.2-201ENST00000564681 3095 ntBASIC7.55□□□□□ -1.2
NUP98P52948 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.55□□□□□ -1.2
NUP98P52948 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
NUP98P52948 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.55□□□□□ -1.2
NUP98P52948 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC7.55□□□□□ -1.2
NUP98P52948 MIR375-201ENST00000362103 64 ntBASIC7.55□□□□□ -1.2
NUP98P52948 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.55□□□□□ -1.2
NUP98P52948 OR2W4P-201ENST00000406496 926 ntBASIC7.55□□□□□ -1.2
NUP98P52948 AC008629.2-201ENST00000503783 483 ntBASIC7.55□□□□□ -1.2
NUP98P52948 SSX6-203ENST00000509958 336 ntTSL 3 BASIC7.55□□□□□ -1.2
NUP98P52948 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC7.55□□□□□ -1.2
NUP98P52948 AC073581.1-201ENST00000519036 575 ntBASIC7.55□□□□□ -1.2
NUP98P52948 PCNAP4-201ENST00000532690 730 ntBASIC7.55□□□□□ -1.2
NUP98P52948 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC7.55□□□□□ -1.2
NUP98P52948 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC7.55□□□□□ -1.2
NUP98P52948 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC7.55□□□□□ -1.2
NUP98P52948 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC7.55□□□□□ -1.2
NUP98P52948 BX323046.1-201ENST00000610145 535 ntBASIC7.55□□□□□ -1.2
NUP98P52948 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC7.55□□□□□ -1.2
NUP98P52948 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC7.55□□□□□ -1.2
NUP98P52948 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 AC110716.2-201ENST00000563865 3945 ntBASIC7.55□□□□□ -1.2
NUP98P52948 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC7.55□□□□□ -1.2
NUP98P52948 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC7.55□□□□□ -1.2
NUP98P52948 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC7.55□□□□□ -1.2
NUP98P52948 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 SHQ1P1-201ENST00000437111 1544 ntBASIC7.55□□□□□ -1.2
NUP98P52948 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
NUP98P52948 OR9K1P-201ENST00000326513 941 ntBASIC7.55□□□□□ -1.2
NUP98P52948 SDHDP6-201ENST00000414693 480 ntBASIC7.55□□□□□ -1.2
NUP98P52948 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC7.55□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms