Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP004247.4-201ENST00000608484 942 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AC023158.2-201ENST00000614876 543 ntBASIC7.52□□□□□ -1.21
MSX1P28360 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AC026336.5-201ENST00000624455 738 ntBASIC7.52□□□□□ -1.21
MSX1P28360 RPSAP68-201ENST00000625020 438 ntBASIC7.52□□□□□ -1.21
MSX1P28360 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
MSX1P28360 AKAP3-201ENST00000228850 3339 ntAPPRIS P1 TSL 5 BASIC7.52□□□□□ -1.21
MSX1P28360 GINS1-201ENST00000262460 3249 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 CELF1-215ENST00000532048 3044 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 CYP4A22-203ENST00000371891 2535 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC7.52□□□□□ -1.21
MSX1P28360 FBXO11-202ENST00000403359 4055 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 AC005520.1-201ENST00000556551 3695 ntAPPRIS P1 TSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 EPHB2-201ENST00000374627 4014 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
MSX1P28360 AC009148.1-201ENST00000570148 2693 ntBASIC7.52□□□□□ -1.21
MSX1P28360 ZBTB18-202ENST00000622512 3740 ntAPPRIS ALT1 TSL 3 BASIC7.52□□□□□ -1.21
MSX1P28360 TRIM51EP-201ENST00000524374 1516 ntBASIC7.52□□□□□ -1.21
MSX1P28360 ERCC6-208ENST00000515869 3439 ntTSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 SP140-203ENST00000392045 3246 ntAPPRIS P3 TSL 2 BASIC7.52□□□□□ -1.21
MSX1P28360 ACTBP13-201ENST00000423971 3959 ntBASIC7.52□□□□□ -1.21
MSX1P28360 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
MSX1P28360 CFAP57-201ENST00000372492 4244 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 KAT14-206ENST00000489634 3152 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 CEACAM5-208ENST00000615021 1694 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 GUCY1A3-202ENST00000393832 4286 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 GPR156-201ENST00000315843 4193 ntAPPRIS P3 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 ADIPOQ-AS1-201ENST00000422718 3443 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 AC012513.3-201ENST00000623250 2116 ntBASIC7.51□□□□□ -1.21
MSX1P28360 OR2A5-202ENST00000641693 8681 ntAPPRIS P1 BASIC7.51□□□□□ -1.21
MSX1P28360 PIWIL3-202ENST00000527701 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 USP3-201ENST00000268049 5311 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 HNRNPA1P54-201ENST00000411857 9714 ntBASIC7.51□□□□□ -1.21
MSX1P28360 NUCB2-201ENST00000323688 1905 ntAPPRIS ALT1 TSL 2 BASIC7.51□□□□□ -1.21
MSX1P28360 EEF1A1P13-201ENST00000503537 1389 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC100771.2-201ENST00000525833 1350 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 FAM177B-201ENST00000360827 764 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 RNU4-73P-201ENST00000363164 141 ntBASIC7.51□□□□□ -1.21
MSX1P28360 RNU6-660P-201ENST00000364566 109 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AL390760.1-201ENST00000366188 410 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 GSTM1-203ENST00000369819 790 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 PCOTH-201ENST00000382133 805 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 Y_RNA.548-201ENST00000384656 105 ntBASIC7.51□□□□□ -1.21
MSX1P28360 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 STAG3L1-201ENST00000404291 496 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 RN7SKP85-201ENST00000411349 318 ntBASIC7.51□□□□□ -1.21
MSX1P28360 PIGPP2-201ENST00000411569 458 ntBASIC7.51□□□□□ -1.21
MSX1P28360 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC7.51□□□□□ -1.21
MSX1P28360 RPE-204ENST00000411934 792 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 CCR8-202ENST00000414803 1078 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC7.51□□□□□ -1.21
MSX1P28360 HMGN2P24-201ENST00000433516 273 ntBASIC7.51□□□□□ -1.21
MSX1P28360 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC7.51□□□□□ -1.21
MSX1P28360 AC009988.1-201ENST00000434988 310 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 ASS1P5-201ENST00000435496 1239 ntBASIC7.51□□□□□ -1.21
MSX1P28360 RPL21P88-201ENST00000436649 436 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 AC005077.3-202ENST00000437494 300 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 AC124861.1-201ENST00000457178 429 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 AC013275.1-202ENST00000457436 501 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 SSR1-203ENST00000462112 1094 ntTSL 4 BASIC7.51□□□□□ -1.21
MSX1P28360 RPL5P24-201ENST00000463742 885 ntBASIC7.51□□□□□ -1.21
MSX1P28360 RN7SL333P-201ENST00000476398 297 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC026254.1-201ENST00000479473 431 ntBASIC7.51□□□□□ -1.21
MSX1P28360 RN7SL563P-201ENST00000481233 298 ntBASIC7.51□□□□□ -1.21
MSX1P28360 RN7SL464P-201ENST00000492743 297 ntBASIC7.51□□□□□ -1.21
MSX1P28360 RN7SL864P-201ENST00000493457 285 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC008638.2-201ENST00000503840 715 ntBASIC7.51□□□□□ -1.21
MSX1P28360 HSD17B11-203ENST00000507286 851 ntTSL 5 BASIC7.51□□□□□ -1.21
MSX1P28360 IMPA1P1-201ENST00000510718 842 ntBASIC7.51□□□□□ -1.21
MSX1P28360 PTGES3P3-201ENST00000511479 482 ntBASIC7.51□□□□□ -1.21
MSX1P28360 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC7.51□□□□□ -1.21
MSX1P28360 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 AP002957.1-201ENST00000525952 406 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 AP000445.1-201ENST00000526692 741 ntBASIC7.51□□□□□ -1.21
MSX1P28360 OR5AQ1P-201ENST00000527596 927 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC7.51□□□□□ -1.21
MSX1P28360 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 VDAC2P2-201ENST00000544463 901 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AL132855.1-201ENST00000557368 207 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC7.51□□□□□ -1.21
MSX1P28360 MIR4262-201ENST00000578394 54 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC008752.3-201ENST00000588113 712 ntBASIC7.51□□□□□ -1.21
MSX1P28360 APOC1-202ENST00000588750 689 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
MSX1P28360 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC7.51□□□□□ -1.21
MSX1P28360 SLC6A21P-201ENST00000599458 369 ntBASIC7.51□□□□□ -1.21
MSX1P28360 BNIP3P11-201ENST00000603878 563 ntBASIC7.51□□□□□ -1.21
MSX1P28360 AC098614.4-201ENST00000607601 462 ntBASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms