Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNA5SP122-201ENST00000384457 108 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 TXNP7-201ENST00000406296 293 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 TGFB2-AS1-201ENST00000414452 557 ntTSL 3 BASIC8.72□□□□□ -1.01
COL9A1P20849 AL160153.1-201ENST00000415285 429 ntTSL 3 BASIC8.72□□□□□ -1.01
COL9A1P20849 AC073136.2-201ENST00000417282 849 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 AC015977.2-201ENST00000420852 567 ntTSL 3 BASIC8.72□□□□□ -1.01
COL9A1P20849 AC006065.1-201ENST00000422539 802 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 MTCO3P46-201ENST00000425787 232 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 SNRPEP4-201ENST00000435815 279 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 RPL37P21-201ENST00000435890 276 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AC243962.1-201ENST00000441512 579 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AL512605.1-202ENST00000441919 381 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AL356121.1-201ENST00000442911 156 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 CBWD4P-201ENST00000445695 655 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AC242426.2-201ENST00000446956 795 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 LINC00265-202ENST00000448955 468 ntTSL 2 BASIC8.72□□□□□ -1.01
COL9A1P20849 SNORD19B-201ENST00000459623 84 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 RN7SL168P-201ENST00000463821 279 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC8.72□□□□□ -1.01
COL9A1P20849 COX6CP5-201ENST00000527162 228 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC8.72□□□□□ -1.01
COL9A1P20849 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC8.72□□□□□ -1.01
COL9A1P20849 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC8.72□□□□□ -1.01
COL9A1P20849 DNAJC8P1-201ENST00000554535 372 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AC037198.1-201ENST00000560769 281 ntTSL 3 BASIC8.72□□□□□ -1.01
COL9A1P20849 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC8.72□□□□□ -1.01
COL9A1P20849 AC007952.7-201ENST00000583141 757 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 H3F3BP2-201ENST00000583907 357 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AC009977.1-201ENST00000586015 570 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AL109918.3-201ENST00000603072 338 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 AL365434.2-201ENST00000607979 234 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 STMN1P1-201ENST00000617809 440 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 C2orf27A-204ENST00000623058 969 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 SLFN13-210ENST00000534689 3058 ntTSL 2 BASIC8.72□□□□□ -1.01
COL9A1P20849 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 UGT2B25P-201ENST00000511504 1586 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 TCF4-226ENST00000565018 2357 ntTSL 5 BASIC8.72□□□□□ -1.01
COL9A1P20849 NXF5-205ENST00000473265 1348 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 SCMH1-209ENST00000397174 2977 ntAPPRIS P1 TSL 2 BASIC8.72□□□□□ -1.01
COL9A1P20849 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC8.72□□□□□ -1.01
COL9A1P20849 SIM1-202ENST00000369208 8430 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 MKL2-207ENST00000573051 1938 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 PRKAR1A-211ENST00000586397 1940 ntAPPRIS P1 TSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 ZNF250-201ENST00000292579 6364 ntAPPRIS P3 TSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 AL592158.1-201ENST00000632210 4477 ntBASIC8.72□□□□□ -1.01
COL9A1P20849 CD28-202ENST00000374481 4526 ntTSL 1 (best) BASIC8.72□□□□□ -1.01
COL9A1P20849 MAST4-201ENST00000261569 7664 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.01
COL9A1P20849 HIPK1-206ENST00000369559 3424 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
COL9A1P20849 C2orf42-201ENST00000264434 2581 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
COL9A1P20849 FAM120B-201ENST00000476287 5155 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.01
COL9A1P20849 KCNE1-206ENST00000432085 3184 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
COL9A1P20849 PTPRB-204ENST00000538708 5839 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
COL9A1P20849 AL356361.1-201ENST00000400943 1459 ntBASIC8.71□□□□□ -1.01
COL9A1P20849 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
COL9A1P20849 COL4A4-201ENST00000396625 9895 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.01
COL9A1P20849 APOL1-201ENST00000319136 3000 ntAPPRIS P4 TSL 1 (best) BASIC8.71□□□□□ -1.01
COL9A1P20849 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC8.71□□□□□ -1.01
COL9A1P20849 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.01
COL9A1P20849 CASC19-243ENST00000641588 1546 ntBASIC8.71□□□□□ -1.01
COL9A1P20849 ANP32E-208ENST00000583931 3451 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 OR11H13P-201ENST00000359695 979 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 RNA5SP188-201ENST00000362916 129 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 RNU6-451P-201ENST00000362921 107 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC8.71□□□□□ -1.02
COL9A1P20849 HMGB3P18-201ENST00000406327 590 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 AL139805.1-201ENST00000407837 289 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC8.71□□□□□ -1.02
COL9A1P20849 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC8.71□□□□□ -1.02
COL9A1P20849 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC8.71□□□□□ -1.02
COL9A1P20849 CBX3P6-201ENST00000430257 527 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 GTF2IP20-201ENST00000431663 360 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC8.71□□□□□ -1.02
COL9A1P20849 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC8.71□□□□□ -1.02
COL9A1P20849 RPS4XP19-201ENST00000460237 736 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 AF213884.1-201ENST00000488102 463 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 AC244505.1-201ENST00000502642 307 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC8.71□□□□□ -1.02
COL9A1P20849 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC8.71□□□□□ -1.02
COL9A1P20849 ZNF345-205ENST00000526123 458 ntTSL 3 BASIC8.71□□□□□ -1.02
COL9A1P20849 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC8.71□□□□□ -1.02
COL9A1P20849 AC087379.2-201ENST00000532242 471 ntTSL 3 BASIC8.71□□□□□ -1.02
COL9A1P20849 AC084361.1-201ENST00000537730 607 ntTSL 3 BASIC8.71□□□□□ -1.02
COL9A1P20849 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC8.71□□□□□ -1.02
COL9A1P20849 CHEK2P2-201ENST00000554701 672 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC8.71□□□□□ -1.02
COL9A1P20849 AL596327.1-201ENST00000603629 213 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 HMGB1P24-202ENST00000615653 685 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 AC024023.1-201ENST00000624530 922 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 CLUHP10-201ENST00000631979 980 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 CCDC85C-201ENST00000380243 16393 ntAPPRIS P1 TSL 5 BASIC8.71□□□□□ -1.02
COL9A1P20849 AL161636.1-201ENST00000427145 2254 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 SH3GLB1-203ENST00000535010 6227 ntTSL 2 BASIC8.71□□□□□ -1.02
COL9A1P20849 OPHN1-201ENST00000355520 7879 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 MCTP1-201ENST00000312216 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 AC125603.4-201ENST00000621942 2699 ntBASIC8.71□□□□□ -1.02
COL9A1P20849 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 ZFYVE1-201ENST00000318876 4362 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
COL9A1P20849 OR4P4-202ENST00000641760 2086 ntAPPRIS P1 BASIC8.71□□□□□ -1.02
COL9A1P20849 SLF2-201ENST00000238961 7288 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms