RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 PELP1Q8IZL8 1130 aaKnown RBP17.35■□□□□ 0.37
CD28-202ENST00000374481 MYT1Q01538 1121 aa17.09■□□□□ 0.33
CD28-202ENST00000374481 NISCHQ9Y2I1 1504 aa16.9■□□□□ 0.3
CD28-202ENST00000374481 PCGF6Q9BYE7 350 aa16.51■□□□□ 0.23
CD28-202ENST00000374481 HRCP23327 699 aa16.46■□□□□ 0.22
CD28-202ENST00000374481 SUPT5HO00267 1087 aaKnown RBP16.32■□□□□ 0.2
CD28-202ENST00000374481 CENPBP07199 599 aaPredicted RBP16.23■□□□□ 0.19
CD28-202ENST00000374481 ZEB1P37275 1124 aaPredicted RBP16.1■□□□□ 0.17
CD28-202ENST00000374481 PPARGC1BQ86YN6 1023 aaKnown RBP16.1■□□□□ 0.17
CD28-202ENST00000374481 TTBK1Q5TCY1 1321 aaPredicted RBP15.82■□□□□ 0.12
CD28-202ENST00000374481 SHROOM4Q9ULL8 1493 aa15.8■□□□□ 0.12
CD28-202ENST00000374481 ERICH6Q7L0X2 663 aa15.72■□□□□ 0.11
CD28-202ENST00000374481 YTHDC1Q96MU7 727 aaKnown RBP15.69■□□□□ 0.1
CD28-202ENST00000374481 DCAF8L2P0C7V8 631 aa15.66■□□□□ 0.1
CD28-202ENST00000374481 TRIM26Q12899 539 aaPredicted RBP15.65■□□□□ 0.1
CD28-202ENST00000374481 GTF3C3Q9Y5Q9 886 aa15.65■□□□□ 0.1
CD28-202ENST00000374481 CCER1Q8TC90 406 aaPredicted RBP15.6■□□□□ 0.09
CD28-202ENST00000374481 SCAF1Q9H7N4 1312 aaKnown RBP15.59■□□□□ 0.09
CD28-202ENST00000374481 EHMT2Q96KQ7 1210 aa15.56■□□□□ 0.08
CD28-202ENST00000374481 ACIN1Q9UKV3 1341 aaKnown RBP15.53■□□□□ 0.08
CD28-202ENST00000374481 DIEXFQ68CQ4 756 aaKnown RBP15.36■□□□□ 0.05
CD28-202ENST00000374481 FAM9AQ8IZU1 332 aaPredicted RBP15.3■□□□□ 0.04
CD28-202ENST00000374481 NEFLP07196 543 aa15.29■□□□□ 0.04
CD28-202ENST00000374481 NEUROD1Q13562 356 aa15.26■□□□□ 0.03
CD28-202ENST00000374481 CHIC1Q5VXU3 224 aa15.24■□□□□ 0.03
CD28-202ENST00000374481 LOC105371045A0A1W2PR82 267 aa15.21■□□□□ 0.03
CD28-202ENST00000374481 BCL11AQ9H165 835 aa15.17■□□□□ 0.02
CD28-202ENST00000374481 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.06■□□□□ 0
CD28-202ENST00000374481 ANP32EQ9BTT0 268 aa15□□□□□ -0.01
CD28-202ENST00000374481 TRIM41Q8WV44 630 aa14.99□□□□□ -0.01
CD28-202ENST00000374481 APLP2Q06481 763 aa14.96□□□□□ -0.01
CD28-202ENST00000374481 RTL5Q5HYW3 569 aaPredicted RBP14.93□□□□□ -0.02
CD28-202ENST00000374481 BCANQ96GW7 911 aa14.93□□□□□ -0.02
CD28-202ENST00000374481 ZNF316A6NFI3 1004 aaPredicted RBP14.84□□□□□ -0.03
CD28-202ENST00000374481 CLSPNQ9HAW4 1339 aa14.82□□□□□ -0.04
CD28-202ENST00000374481 DCAF1Q9Y4B6 1507 aa14.78□□□□□ -0.04
CD28-202ENST00000374481 MYT1LQ9UL68 1186 aa14.76□□□□□ -0.05
CD28-202ENST00000374481 EIF5BO60841 1220 aaKnown RBP14.75□□□□□ -0.05
CD28-202ENST00000374481 CDK11AQ9UQ88 783 aaPredicted RBP14.69□□□□□ -0.06
CD28-202ENST00000374481 CSRNP3Q8WYN3 585 aa14.64□□□□□ -0.07
CD28-202ENST00000374481 DAXXQ9UER7 740 aaPredicted RBP14.61□□□□□ -0.07
CD28-202ENST00000374481 HNRNPUL2Q1KMD3 747 aaKnown RBP14.6□□□□□ -0.07
CD28-202ENST00000374481 PRKCSHP14314 528 aaPredicted RBP14.59□□□□□ -0.07
CD28-202ENST00000374481 FKBP8Q14318 412 aa14.58□□□□□ -0.08
CD28-202ENST00000374481 MIER1Q8N108 512 aa14.55□□□□□ -0.08
CD28-202ENST00000374481 UBTFP17480 764 aaKnown RBP14.55□□□□□ -0.08
CD28-202ENST00000374481 GLIPR1L2Q4G1C9 344 aa14.54□□□□□ -0.08
CD28-202ENST00000374481 MYO15BQ96JP2 1530 aa14.5□□□□□ -0.09
CD28-202ENST00000374481 NBR1Q14596 966 aa14.49□□□□□ -0.09
CD28-202ENST00000374481 SUPT16HQ9Y5B9 1047 aaKnown RBP14.45□□□□□ -0.1
CD28-202ENST00000374481 RANGAP1P46060 587 aaPredicted RBP14.45□□□□□ -0.1
CD28-202ENST00000374481 CCDC180Q9P1Z9 1646 aa14.42□□□□□ -0.1
CD28-202ENST00000374481 ANP32AP39687 249 aaKnown RBP14.41□□□□□ -0.1
CD28-202ENST00000374481 TSHZ2Q9NRE2 1034 aa14.39□□□□□ -0.11
CD28-202ENST00000374481 ITGAEP38570 1179 aa14.36□□□□□ -0.11
CD28-202ENST00000374481 DEKP35659 375 aaKnown RBP14.35□□□□□ -0.11
CD28-202ENST00000374481 RTN4Q9NQC3 1192 aaKnown RBP14.34□□□□□ -0.11
CD28-202ENST00000374481 ABCC9O60706 1549 aa14.33□□□□□ -0.12
CD28-202ENST00000374481 RBM19Q9Y4C8 960 aaKnown RBP14.29□□□□□ -0.12
CD28-202ENST00000374481 ANP32CO43423 234 aa14.29□□□□□ -0.12
CD28-202ENST00000374481 ZBTB47Q9UFB7 747 aaPredicted RBP14.26□□□□□ -0.13
CD28-202ENST00000374481 ZCCHC6Q5VYS8 1495 aaKnown RBP14.26□□□□□ -0.13
CD28-202ENST00000374481 NPM2Q86SE8 214 aaKnown RBP14.22□□□□□ -0.13
CD28-202ENST00000374481 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.2□□□□□ -0.14
CD28-202ENST00000374481 CCDC136Q96JN2 1154 aa14.18□□□□□ -0.14
CD28-202ENST00000374481 TRIM52Q96A61 297 aa14.17□□□□□ -0.14
CD28-202ENST00000374481 ERICH6BQ5W0A0 696 aa14.15□□□□□ -0.14
CD28-202ENST00000374481 ANO8Q9HCE9 1232 aaPredicted RBP14.11□□□□□ -0.15
CD28-202ENST00000374481 NOP58Q9Y2X3 529 aaKnown RBP14.1□□□□□ -0.15
CD28-202ENST00000374481 IRX6P78412 446 aaPredicted RBP14.1□□□□□ -0.15
CD28-202ENST00000374481 CNGB1Q14028 1251 aaPredicted RBP14.1□□□□□ -0.15
CD28-202ENST00000374481 HNRNPUQ00839 825 aaKnown RBP eCLIP14.08□□□□□ -0.16
CD28-202ENST00000374481 NEFMP07197 916 aa14.07□□□□□ -0.16
CD28-202ENST00000374481 DDX10Q13206 875 aaKnown RBP14.06□□□□□ -0.16
CD28-202ENST00000374481 POLR3GLQ9BT43 218 aa14.02□□□□□ -0.16
CD28-202ENST00000374481 ATP1B4Q9UN42 357 aaPredicted RBP14.02□□□□□ -0.16
CD28-202ENST00000374481 PPM1GO15355 546 aaPredicted RBP13.93□□□□□ -0.18
CD28-202ENST00000374481 SALL2Q9Y467 1007 aaPredicted RBP13.92□□□□□ -0.18
CD28-202ENST00000374481 LAS1LQ9Y4W2 734 aaKnown RBP13.92□□□□□ -0.18
CD28-202ENST00000374481 NAP1L5Q96NT1 182 aaPredicted RBP13.9□□□□□ -0.18
CD28-202ENST00000374481 ARXQ96QS3 562 aa13.89□□□□□ -0.19
CD28-202ENST00000374481 PKNOX2Q96KN3 472 aa13.88□□□□□ -0.19
CD28-202ENST00000374481 PPP4R2Q9NY27 417 aa13.88□□□□□ -0.19
CD28-202ENST00000374481 FANCIQ9NVI1 1328 aa13.86□□□□□ -0.19
CD28-202ENST00000374481 VSIG10Q8N0Z9 540 aa13.85□□□□□ -0.19
CD28-202ENST00000374481 FAM9BQ8IZU0 186 aa13.83□□□□□ -0.2
CD28-202ENST00000374481 B4GALNT3Q6L9W6 998 aa13.8□□□□□ -0.2
CD28-202ENST00000374481 DDRGK1Q96HY6 314 aa13.8□□□□□ -0.2
CD28-202ENST00000374481 ANP32BQ92688 251 aaKnown RBP13.79□□□□□ -0.2
CD28-202ENST00000374481 RSPH6AQ9H0K4 717 aa13.78□□□□□ -0.2
CD28-202ENST00000374481 FAM50AQ14320 339 aaKnown RBP13.75□□□□□ -0.21
CD28-202ENST00000374481 UBE2Q2Q8WVN8 375 aa13.75□□□□□ -0.21
CD28-202ENST00000374481 PODXL2Q9NZ53 605 aa13.75□□□□□ -0.21
CD28-202ENST00000374481 HSP90AA1P07900 732 aaKnown RBP13.75□□□□□ -0.21
CD28-202ENST00000374481 TIMELESSQ9UNS1 1208 aa13.74□□□□□ -0.21
CD28-202ENST00000374481 TNNT2P45379 298 aaPredicted RBP13.72□□□□□ -0.21
CD28-202ENST00000374481 HIRIP3Q9BW71 556 aaPredicted RBP13.72□□□□□ -0.21
CD28-202ENST00000374481 IPO9Q96P70 1041 aaKnown RBP13.72□□□□□ -0.21
CD28-202ENST00000374481 IL27Q8NEV9 243 aa13.71□□□□□ -0.21
CD28-202ENST00000374481 TRIM44Q96DX7 344 aaPredicted RBP13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms