Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC6.32□□□□□ -1.4
MSH3P20585 AC008055.1-201ENST00000547032 609 ntBASIC6.32□□□□□ -1.4
MSH3P20585 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC6.32□□□□□ -1.4
MSH3P20585 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 SNORA74.4-201ENST00000607595 199 ntBASIC6.32□□□□□ -1.4
MSH3P20585 AC016590.3-201ENST00000611171 753 ntBASIC6.32□□□□□ -1.4
MSH3P20585 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 AL122023.1-201ENST00000622847 530 ntBASIC6.32□□□□□ -1.4
MSH3P20585 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.32□□□□□ -1.4
MSH3P20585 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
MSH3P20585 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 MS4A3-201ENST00000278865 1613 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.32□□□□□ -1.4
MSH3P20585 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSH3P20585 AL157831.2-201ENST00000564681 3095 ntBASIC6.31□□□□□ -1.4
MSH3P20585 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.31□□□□□ -1.4
MSH3P20585 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC6.31□□□□□ -1.4
MSH3P20585 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC6.31□□□□□ -1.4
MSH3P20585 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
MSH3P20585 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.31□□□□□ -1.4
MSH3P20585 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.31□□□□□ -1.4
MSH3P20585 RUNX1T1-234ENST00000521553 1346 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
MSH3P20585 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.31□□□□□ -1.4
MSH3P20585 RNA5SP478-201ENST00000364657 115 ntBASIC6.31□□□□□ -1.4
MSH3P20585 RNA5SP77-201ENST00000365394 120 ntBASIC6.31□□□□□ -1.4
MSH3P20585 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
MSH3P20585 AC121334.1-201ENST00000396414 802 ntBASIC6.31□□□□□ -1.4
MSH3P20585 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 U3.43-201ENST00000410734 213 ntBASIC6.31□□□□□ -1.4
MSH3P20585 RPS20P25-201ENST00000412447 352 ntBASIC6.31□□□□□ -1.4
MSH3P20585 RPL21P50-201ENST00000417698 477 ntBASIC6.31□□□□□ -1.4
MSH3P20585 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.31□□□□□ -1.4
MSH3P20585 AC002127.1-201ENST00000421305 225 ntBASIC6.31□□□□□ -1.4
MSH3P20585 FAM183DP-201ENST00000421987 399 ntBASIC6.31□□□□□ -1.4
MSH3P20585 RPL7AP51-201ENST00000422016 760 ntBASIC6.31□□□□□ -1.4
MSH3P20585 AC096632.2-201ENST00000438139 1239 ntBASIC6.31□□□□□ -1.4
MSH3P20585 OR2L9P-201ENST00000444456 913 ntBASIC6.31□□□□□ -1.4
MSH3P20585 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.31□□□□□ -1.4
MSH3P20585 SNX18P26-201ENST00000458433 740 ntBASIC6.31□□□□□ -1.4
MSH3P20585 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.31□□□□□ -1.4
MSH3P20585 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC6.31□□□□□ -1.4
MSH3P20585 RPL29P23-201ENST00000486188 442 ntBASIC6.31□□□□□ -1.4
MSH3P20585 RN7SL714P-201ENST00000487050 298 ntBASIC6.31□□□□□ -1.4
MSH3P20585 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.31□□□□□ -1.4
MSH3P20585 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC6.31□□□□□ -1.4
MSH3P20585 AC093816.1-201ENST00000515076 913 ntBASIC6.31□□□□□ -1.4
MSH3P20585 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.31□□□□□ -1.4
MSH3P20585 AP001000.1-201ENST00000526843 742 ntBASIC6.31□□□□□ -1.4
MSH3P20585 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.31□□□□□ -1.4
MSH3P20585 MT1CP-201ENST00000567054 174 ntBASIC6.31□□□□□ -1.4
MSH3P20585 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.31□□□□□ -1.4
MSH3P20585 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC6.31□□□□□ -1.4
MSH3P20585 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC6.31□□□□□ -1.4
MSH3P20585 AC012676.3-201ENST00000614983 479 ntBASIC6.31□□□□□ -1.4
MSH3P20585 MIR6811-201ENST00000620409 58 ntBASIC6.31□□□□□ -1.4
MSH3P20585 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
MSH3P20585 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSH3P20585 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.31□□□□□ -1.4
MSH3P20585 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC6.31□□□□□ -1.4
MSH3P20585 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.3□□□□□ -1.4
MSH3P20585 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 RPL11P4-201ENST00000332269 436 ntBASIC6.3□□□□□ -1.4
MSH3P20585 AL451142.1-201ENST00000375867 775 ntBASIC6.3□□□□□ -1.4
MSH3P20585 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
MSH3P20585 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 RN7SKP161-201ENST00000411110 305 ntBASIC6.3□□□□□ -1.4
MSH3P20585 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
MSH3P20585 OSTCP4-201ENST00000424397 449 ntBASIC6.3□□□□□ -1.4
MSH3P20585 MRPS21P3-201ENST00000436696 262 ntBASIC6.3□□□□□ -1.4
MSH3P20585 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.3□□□□□ -1.4
MSH3P20585 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSH3P20585 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.3□□□□□ -1.4
MSH3P20585 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC6.3□□□□□ -1.4
MSH3P20585 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms