Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LMX1BO60663 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 AC006511.3-201ENST00000624929 1783 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 OR5T3-201ENST00000303059 1023 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LMX1BO60663 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 ZNF705B-201ENST00000400120 1207 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 GPN3P1-201ENST00000423883 535 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 KCTD9P1-201ENST00000430462 1167 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 AL645939.3-201ENST00000435408 225 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.66□□□□□ -1.5
LMX1BO60663 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.66□□□□□ -1.5
LMX1BO60663 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 AL500527.1-201ENST00000448532 255 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 AC068491.1-201ENST00000449539 1241 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 MTND2P39-201ENST00000457230 764 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 AC005017.1-201ENST00000482002 490 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 RPL5P14-201ENST00000494197 878 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 AC113367.2-201ENST00000505749 160 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.66□□□□□ -1.5
LMX1BO60663 CNIH1-205ENST00000556113 523 ntAPPRIS ALT1 TSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 ANP32BP1-202ENST00000568553 737 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 AC025283.1-201ENST00000572039 734 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.66□□□□□ -1.5
LMX1BO60663 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 AC079315.1-201ENST00000602952 623 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 SNORD96A-201ENST00000606577 79 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 AC004836.1-201ENST00000623032 634 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 AP003072.5-201ENST00000623872 773 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 ZNF969P-201ENST00000510345 2341 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC5.66□□□□□ -1.5
LMX1BO60663 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 OR2AH1P-202ENST00000641232 2744 ntBASIC5.66□□□□□ -1.5
LMX1BO60663 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.66□□□□□ -1.5
LMX1BO60663 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LMX1BO60663 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC011815.2-201ENST00000618230 2021 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 DOCK11P1-201ENST00000553480 5932 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 AC018765.1-201ENST00000623357 3446 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 AP000568.1-201ENST00000282964 442 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 RN7SKP237-201ENST00000364663 301 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 RNA5SP122-201ENST00000384457 108 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AL391419.1-201ENST00000398901 1275 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LMX1BO60663 VIM2P-201ENST00000402383 1294 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AC007568.1-201ENST00000422912 471 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 AL389925.1-201ENST00000432257 728 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC5.65□□□□□ -1.5
LMX1BO60663 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.65□□□□□ -1.5
LMX1BO60663 AC099340.1-201ENST00000475247 599 ntBASIC5.65□□□□□ -1.5
LMX1BO60663 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms