Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RN7SKP221-201ENST00000410420 301 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 RPL23AP85-201ENST00000421838 433 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC106901.1-201ENST00000425086 698 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 GTF2IP14-201ENST00000441415 586 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC044810.1-201ENST00000480271 711 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC093816.1-201ENST00000515076 913 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 RNA5SP116-201ENST00000516132 98 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC025857.1-201ENST00000525252 377 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AP001804.2-201ENST00000533932 910 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC011270.1-201ENST00000558606 583 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC026898.1-201ENST00000586404 571 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 NDUFB9P1-201ENST00000604683 510 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC073862.4-201ENST00000622982 854 ntBASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC8.42□□□□□ -1.06
CHMP4AQ9BY43 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 NCOA4P3-201ENST00000513203 1877 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 CASC19-228ENST00000641414 1684 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC010329.1-201ENST00000593903 8328 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 OR7A2P-201ENST00000304105 930 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 PAGE2B-201ENST00000374971 493 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 RPL12P23-201ENST00000405880 490 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC098818.1-201ENST00000478593 252 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 ASNSP4-201ENST00000511103 447 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 BUB1P1-201ENST00000603541 607 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AL359704.2-201ENST00000604335 521 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC019257.2-201ENST00000605539 497 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AL136097.3-201ENST00000611097 505 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 CNTNAP3P1-201ENST00000616657 906 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC012653.2-201ENST00000621880 420 ntBASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC8.41□□□□□ -1.06
CHMP4AQ9BY43 AC025809.2-201ENST00000625085 1802 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 TTC41P-205ENST00000551270 3963 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AL139384.2-201ENST00000613809 3590 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 API5P1-201ENST00000424316 1510 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AC125238.2-201ENST00000430003 1440 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 EPHA3-203ENST00000494014 3085 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 SNORA64.3-201ENST00000365647 134 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 PRELID1P1-201ENST00000403549 660 ntBASIC8.4□□□□□ -1.06
CHMP4AQ9BY43 RPL5P20-201ENST00000403848 896 ntBASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms