Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 AC027279.4-201ENST00000624371 2072 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 UGT2B24P-201ENST00000514441 1597 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 U3.10-201ENST00000364459 214 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 PDCL3P5-201ENST00000398028 722 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 AL035467.1-201ENST00000403583 686 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 RN7SKP268-201ENST00000411107 316 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 RPLP1P10-201ENST00000413972 339 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 UBBP5-201ENST00000446970 266 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 RAB28P2-201ENST00000454299 641 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 AC090602.1-201ENST00000469695 252 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 AL928654.1-201ENST00000476081 354 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC090958.1-201ENST00000511122 351 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 NPM1P21-201ENST00000513394 762 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC021242.2-202ENST00000522129 545 ntTSL 4 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC4.63□□□□□ -1.67
FOXA3P55318 HNRNPCP8-201ENST00000528764 888 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC4.63□□□□□ -1.67
FOXA3P55318 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 NR2F2-AS1-205ENST00000559505 1005 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 CCL2-202ENST00000580907 736 ntTSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 RN7SL664P-201ENST00000584239 305 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC060780.2-201ENST00000589047 198 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC006115.2-201ENST00000596823 202 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC4.63□□□□□ -1.67
FOXA3P55318 FRG2MP-201ENST00000613317 856 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 LINC02341-202ENST00000637462 1295 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 AC018793.5-201ENST00000640302 585 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
FOXA3P55318 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.63□□□□□ -1.67
FOXA3P55318 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
FOXA3P55318 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 AC125336.1-201ENST00000508893 2827 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 RBPJP6-201ENST00000411556 1431 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 OFD1P8Y-201ENST00000449148 1433 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 AC022325.1-201ENST00000502748 2199 ntBASIC4.63□□□□□ -1.67
FOXA3P55318 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
FOXA3P55318 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA3P55318 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXA3P55318 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
FOXA3P55318 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC4.62□□□□□ -1.67
FOXA3P55318 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC4.62□□□□□ -1.67
FOXA3P55318 AL137141.1-201ENST00000624622 4836 ntBASIC4.62□□□□□ -1.67
FOXA3P55318 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXA3P55318 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA3P55318 TOMM7-202ENST00000372879 514 ntTSL 4 BASIC4.62□□□□□ -1.67
FOXA3P55318 MRPS6P2-201ENST00000381143 370 ntBASIC4.62□□□□□ -1.67
FOXA3P55318 TP63-205ENST00000392461 1251 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
FOXA3P55318 FDPSP5-201ENST00000399474 1057 ntBASIC4.62□□□□□ -1.67
FOXA3P55318 VIM2P-201ENST00000402383 1294 ntBASIC4.62□□□□□ -1.67
FOXA3P55318 NPM1P37-201ENST00000403105 874 ntBASIC4.62□□□□□ -1.67
FOXA3P55318 RN7SKP137-201ENST00000411074 307 ntBASIC4.62□□□□□ -1.67
FOXA3P55318 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
FOXA3P55318 RTCA-AS1-201ENST00000421185 423 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXA3P55318 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXA3P55318 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC4.62□□□□□ -1.67
FOXA3P55318 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC4.62□□□□□ -1.67
FOXA3P55318 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXA3P55318 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC4.62□□□□□ -1.67
FOXA3P55318 AC145625.1-201ENST00000441444 592 ntTSL 4 BASIC4.62□□□□□ -1.67
FOXA3P55318 RPSAP40-201ENST00000442343 891 ntBASIC4.62□□□□□ -1.67
FOXA3P55318 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC4.62□□□□□ -1.67
FOXA3P55318 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms