Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC008753.1-201ENST00000423096 284 ntBASIC7.4□□□□□ -1.23
BRCA1P38398 TNPO1P1-201ENST00000423641 1138 ntBASIC7.4□□□□□ -1.23
BRCA1P38398 ING3-204ENST00000431467 1447 ntTSL 2 BASIC7.4□□□□□ -1.23
BRCA1P38398 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.4□□□□□ -1.23
BRCA1P38398 AL606490.1-201ENST00000452266 765 ntBASIC7.4□□□□□ -1.23
BRCA1P38398 HIGD1AP14-201ENST00000507617 282 ntBASIC7.4□□□□□ -1.23
BRCA1P38398 AC008467.1-201ENST00000512693 5471 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 ASCL3-201ENST00000531618 633 ntAPPRIS P1 BASIC7.4□□□□□ -1.23
BRCA1P38398 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.4□□□□□ -1.23
BRCA1P38398 AC015923.1-202ENST00000581421 491 ntTSL 2 BASIC7.4□□□□□ -1.23
BRCA1P38398 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC7.4□□□□□ -1.23
BRCA1P38398 MIR6820-201ENST00000611508 62 ntBASIC7.4□□□□□ -1.23
BRCA1P38398 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.4□□□□□ -1.23
BRCA1P38398 AC008115.4-201ENST00000619780 775 ntBASIC7.4□□□□□ -1.23
BRCA1P38398 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC7.4□□□□□ -1.23
BRCA1P38398 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC7.4□□□□□ -1.23
BRCA1P38398 AL359220.1-202ENST00000500036 4499 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 FSD2-201ENST00000334574 6418 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 IPO9-201ENST00000361565 11435 ntAPPRIS P1 TSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC7.4□□□□□ -1.23
BRCA1P38398 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.4□□□□□ -1.23
BRCA1P38398 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 EIF4E3-204ENST00000425534 9949 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC7.39□□□□□ -1.23
BRCA1P38398 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC7.39□□□□□ -1.23
BRCA1P38398 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 RN7SKP128-201ENST00000364270 303 ntBASIC7.39□□□□□ -1.23
BRCA1P38398 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC7.39□□□□□ -1.23
BRCA1P38398 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.39□□□□□ -1.23
BRCA1P38398 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.39□□□□□ -1.23
BRCA1P38398 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC7.39□□□□□ -1.23
BRCA1P38398 HMGB3P24-201ENST00000433260 622 ntBASIC7.39□□□□□ -1.23
BRCA1P38398 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 OR2AO1P-201ENST00000476497 403 ntBASIC7.39□□□□□ -1.23
BRCA1P38398 AC114728.1-201ENST00000488289 483 ntBASIC7.39□□□□□ -1.23
BRCA1P38398 AC106800.2-201ENST00000514009 1103 ntBASIC7.39□□□□□ -1.23
BRCA1P38398 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC7.39□□□□□ -1.23
BRCA1P38398 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC7.39□□□□□ -1.23
BRCA1P38398 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC7.39□□□□□ -1.23
BRCA1P38398 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC7.39□□□□□ -1.23
BRCA1P38398 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC7.39□□□□□ -1.23
BRCA1P38398 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 AC024587.1-201ENST00000505925 2157 ntBASIC7.39□□□□□ -1.23
BRCA1P38398 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC7.39□□□□□ -1.23
BRCA1P38398 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
BRCA1P38398 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
BRCA1P38398 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.39□□□□□ -1.23
BRCA1P38398 LRRC37A6P-202ENST00000448648 5444 ntBASIC7.39□□□□□ -1.23
BRCA1P38398 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 AL109941.1-201ENST00000401925 229 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC7.38□□□□□ -1.23
BRCA1P38398 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 AC245047.2-201ENST00000441060 530 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 RN7SL583P-201ENST00000475692 287 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 IGBP1P1-201ENST00000554337 1009 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 NTRK3-212ENST00000558676 4670 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC7.38□□□□□ -1.23
BRCA1P38398 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC7.38□□□□□ -1.23
BRCA1P38398 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 AC018809.2-201ENST00000602436 3823 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 TP63-201ENST00000264731 4909 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 TTC7B-201ENST00000328459 19458 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
BRCA1P38398 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC7.38□□□□□ -1.23
BRCA1P38398 AC009948.5-201ENST00000624360 4406 ntBASIC7.38□□□□□ -1.23
BRCA1P38398 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
BRCA1P38398 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms