Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 QRSL1P1-201ENST00000400977 1540 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 WDR95P-201ENST00000425638 1542 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 RNU6-316P-201ENST00000391027 107 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 OR7E156P-201ENST00000400303 464 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 MIR541-201ENST00000401360 84 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 AL451046.1-201ENST00000406097 534 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 AL049697.3-201ENST00000406493 982 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 RNA5SP431-201ENST00000410312 120 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 AC096537.2-201ENST00000413707 714 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.91□□□□□ -1.46
HOXD4P09016 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 AK3P5-201ENST00000432033 519 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 CDK7P1-201ENST00000434574 693 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXD4P09016 LINC02114-201ENST00000503757 801 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXD4P09016 AC090568.1-201ENST00000509499 856 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 AC093664.1-201ENST00000511779 289 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 HSD3BP3-201ENST00000514706 994 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
HOXD4P09016 PVT1-214ENST00000522875 922 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXD4P09016 AC135983.3-201ENST00000528049 1226 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.91□□□□□ -1.46
HOXD4P09016 AC092375.1-201ENST00000550410 637 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.91□□□□□ -1.46
HOXD4P09016 FXNP1-201ENST00000555153 337 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXD4P09016 AL589863.1-201ENST00000595383 631 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
HOXD4P09016 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
HOXD4P09016 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 ROR1-AS1-201ENST00000412349 1574 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 AC092070.2-203ENST00000598377 3644 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.91□□□□□ -1.46
HOXD4P09016 SELE-203ENST00000367775 3389 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 AC119674.1-204ENST00000641348 1343 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
HOXD4P09016 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 HSPD1P8-201ENST00000400121 1658 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HOXD4P09016 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXD4P09016 IFIT1P1-201ENST00000400497 1449 ntBASIC5.91□□□□□ -1.46
HOXD4P09016 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
HOXD4P09016 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC5.9□□□□□ -1.46
HOXD4P09016 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.9□□□□□ -1.46
HOXD4P09016 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
HOXD4P09016 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXD4P09016 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 RNA5SP433-201ENST00000364491 114 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 RNA5SP279-201ENST00000365513 117 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 ZNF669-202ENST00000366500 489 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 PSMC1P2-201ENST00000423961 1204 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AC021876.1-201ENST00000425959 359 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 H3F3AP5-201ENST00000475267 429 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 SCARNA5-201ENST00000516201 276 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AP001804.1-201ENST00000526868 919 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXD4P09016 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC002519.2-203ENST00000567043 837 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
HOXD4P09016 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC004232.1-201ENST00000571388 208 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC005726.4-201ENST00000582858 458 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 DYNLL1P1-201ENST00000595442 269 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 AL049840.5-201ENST00000602827 552 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AC004805.3-201ENST00000603178 310 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 AC015982.1-201ENST00000608113 465 ntBASIC5.9□□□□□ -1.46
HOXD4P09016 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXD4P09016 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXD4P09016 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXD4P09016 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXD4P09016 MIR6811-201ENST00000620409 58 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms