Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 RABEP1-201ENST00000341923 2490 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 TTC3P1-201ENST00000399586 6081 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 DRP2-202ENST00000395209 7277 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 PLPPR1-202ENST00000395056 2318 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 C9orf131-201ENST00000312292 3409 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 FOPNL-206ENST00000573968 2039 ntTSL 2 BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 ELOVL5-207ENST00000542638 2875 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
CCDC140Q96MF4 AL669831.5-218ENST00000591702 1873 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 TRIM51HP-202ENST00000530412 1823 ntBASIC6.11□□□□□ -1.43
CCDC140Q96MF4 SOSTDC1-202ENST00000396652 2411 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 PROM1-210ENST00000510224 4006 ntAPPRIS P3 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AL022163.1-201ENST00000430261 1569 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 BDNF-213ENST00000525950 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AMN1-208ENST00000537562 1538 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 CORIN-207ENST00000505909 3018 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 MFSD8-243ENST00000641695 1455 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NFRKB-203ENST00000524794 4351 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 PIBF1-208ENST00000617689 2882 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 SLC11A2-202ENST00000262052 4132 ntAPPRIS P3 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NOS2P3-202ENST00000458685 3328 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC124045.1-201ENST00000606008 1953 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 OR1J4-201ENST00000340750 942 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 DYNLRB1-202ENST00000357156 675 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC104297.1-201ENST00000393779 870 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 RNU2-16P-201ENST00000410712 136 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 RN7SKP108-201ENST00000411367 328 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 GYG1P2-201ENST00000426437 1006 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 LINC00665-202ENST00000427868 690 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC068137.1-201ENST00000429272 584 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC092802.3-201ENST00000434207 420 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 MTND1P4-201ENST00000435196 415 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 CICP10-201ENST00000439497 198 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC007365.1-201ENST00000439964 627 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AL935212.3-201ENST00000450729 284 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC093799.1-201ENST00000452411 499 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AL031073.1-201ENST00000503029 1139 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC098799.3-201ENST00000506095 438 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC109927.2-201ENST00000506416 303 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC090071.1-201ENST00000507713 644 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 RN7SKP14-201ENST00000516000 329 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AAMDC-203ENST00000525034 511 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 SSR2-215ENST00000529008 849 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AP002963.1-201ENST00000530590 184 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AL136088.1-201ENST00000531002 541 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 GNPTAB-203ENST00000549165 373 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 LINC02289-202ENST00000556781 861 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC142086.3-201ENST00000563896 802 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC074051.3-201ENST00000570238 358 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 FXYD1-205ENST00000588607 619 ntAPPRIS P1 TSL 3 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC008392.1-201ENST00000600941 437 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC140658.6-201ENST00000603958 201 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC055764.2-201ENST00000610089 670 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC103974.2-201ENST00000611319 778 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC123788.2-201ENST00000612290 283 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC092794.1-201ENST00000612734 582 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 WT1-AS_8.1-201ENST00000615200 275 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 LZTS1-204ENST00000616228 231 ntTSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC022306.2-201ENST00000617563 647 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AL160394.1-201ENST00000624765 724 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC003992.1-201ENST00000635364 557 ntBASIC6.1□□□□□ -1.43
CCDC140Q96MF4 SGO1-AS1-206ENST00000635369 442 ntTSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 SPRR5-201ENST00000636302 817 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
CCDC140Q96MF4 LRRC4C-202ENST00000527150 3085 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 160.7 ms