Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 RNA5SP308-201ENST00000362532 115 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 RNU1-84P-201ENST00000365447 164 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AL354707.3-201ENST00000427308 331 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 AL365220.1-201ENST00000432923 399 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 AL355483.3-201ENST00000446686 752 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 MGAT4D-201ENST00000503109 1281 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AC018645.1-201ENST00000505003 109 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 IGHV4-55-201ENST00000520889 368 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 OR6M2P-201ENST00000529831 871 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AC091304.5-201ENST00000568969 158 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 AC100832.2-201ENST00000582080 776 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 RN7SL475P-201ENST00000583379 298 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 AC063952.1-203ENST00000634410 658 ntBASIC6.7□□□□□ -1.34
CCDC42Q96M95 MBD5-221ENST00000637159 902 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC42Q96M95 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC42Q96M95 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 ELOC-205ENST00000520210 1451 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 RNU1-5P-201ENST00000362684 144 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 OR2W4P-201ENST00000406496 926 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AL353133.1-201ENST00000407695 401 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AL139100.1-201ENST00000408001 498 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 RN7SKP221-201ENST00000410420 301 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 MTND1P10-201ENST00000426108 832 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 DNAJC19P5-201ENST00000443295 316 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 RPL7AP30-201ENST00000482859 796 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AC130366.1-201ENST00000526505 1192 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AP002004.1-206ENST00000532441 876 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AC089984.3-201ENST00000552838 363 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 AC020916.2-201ENST00000591242 360 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 RPL7AP69-201ENST00000595306 806 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 MIR8082-201ENST00000612488 81 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 VN2R1P-201ENST00000449668 1743 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 AC004023.1-201ENST00000561473 1744 ntBASIC6.69□□□□□ -1.34
CCDC42Q96M95 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC42Q96M95 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.69□□□□□ -1.34
CCDC42Q96M95 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC42Q96M95 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC42Q96M95 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC42Q96M95 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 AL080312.1-201ENST00000256654 824 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 AC010894.1-201ENST00000313760 361 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 AC083855.1-201ENST00000440041 258 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 RPS10P14-201ENST00000440748 502 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 RAB28P2-201ENST00000454299 641 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
CCDC42Q96M95 RN7SL643P-201ENST00000471845 291 ntBASIC6.68□□□□□ -1.34
CCDC42Q96M95 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC42Q96M95 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms