Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
HSPG2P98160 RNU1-46P-201ENST00000384425 164 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 AC068138.1-201ENST00000412635 217 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC3.65□□□□□ -1.82
HSPG2P98160 AC016027.4-201ENST00000450866 277 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC3.65□□□□□ -1.82
HSPG2P98160 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC3.65□□□□□ -1.82
HSPG2P98160 MYO18B-201ENST00000335473 8565 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC3.65□□□□□ -1.82
HSPG2P98160 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.82
HSPG2P98160 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 AC009120.2-204ENST00000621548 2032 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 ADAM10-201ENST00000260408 11431 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC3.65□□□□□ -1.82
HSPG2P98160 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 FHIT-201ENST00000341848 174 ntTSL 3 BASIC3.65□□□□□ -1.82
HSPG2P98160 NRIR-201ENST00000366140 799 ntTSL 3 BASIC3.65□□□□□ -1.82
HSPG2P98160 AC068538.1-201ENST00000376856 336 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
HSPG2P98160 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC3.65□□□□□ -1.82
HSPG2P98160 RNA5SP156-201ENST00000410250 110 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 USP9YP9-201ENST00000429406 715 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 CEACAMP7-201ENST00000444105 496 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 LDHBP2-201ENST00000456969 1005 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC3.65□□□□□ -1.82
HSPG2P98160 AC117395.1-201ENST00000487390 403 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC3.65□□□□□ -1.82
HSPG2P98160 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 AC127381.1-201ENST00000555979 939 ntBASIC3.65□□□□□ -1.82
HSPG2P98160 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC3.65□□□□□ -1.82
HSPG2P98160 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 CSNK1A1-201ENST00000261798 6067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HSPG2P98160 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HSPG2P98160 SCAF11-205ENST00000465950 5296 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 AC127070.3-201ENST00000503695 3263 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC3.65□□□□□ -1.83
HSPG2P98160 SLC35E1P1-201ENST00000419313 864 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 AC245047.1-201ENST00000433276 873 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 AC011753.3-201ENST00000443436 406 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC3.65□□□□□ -1.83
HSPG2P98160 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC3.65□□□□□ -1.83
HSPG2P98160 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 AL353662.3-201ENST00000625131 237 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 MIR7641-1-201ENST00000627518 61 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 AC073869.10-201ENST00000642016 354 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 BDNF-AS-201ENST00000499008 2324 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 TFCP2L1-201ENST00000263707 9292 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
HSPG2P98160 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.83
HSPG2P98160 EPHA5-206ENST00000622150 8421 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 LHX9-203ENST00000367390 7413 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 BACE1-202ENST00000392937 5155 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 ARHGAP19-201ENST00000358308 5390 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 SNORA51.8-201ENST00000384234 132 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 OR2AM1P-201ENST00000422137 422 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 AL133173.1-201ENST00000423458 397 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC3.65□□□□□ -1.83
HSPG2P98160 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC3.65□□□□□ -1.83
HSPG2P98160 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 DERA-209ENST00000532964 854 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC3.65□□□□□ -1.83
HSPG2P98160 MRPS21P7-201ENST00000566937 238 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC3.65□□□□□ -1.83
HSPG2P98160 AL953862.2-201ENST00000603089 820 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 LAPTM4BP2-201ENST00000604542 446 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 MAPK10-350ENST00000641777 965 ntBASIC3.65□□□□□ -1.83
HSPG2P98160 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 SEMA6D-203ENST00000355997 5908 ntTSL 5 BASIC3.65□□□□□ -1.83
HSPG2P98160 SEMA6D-204ENST00000358066 5913 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HSPG2P98160 OR4C1P-202ENST00000641065 1569 ntBASIC3.64□□□□□ -1.83
HSPG2P98160 EFHC1-201ENST00000371068 6987 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HSPG2P98160 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HSPG2P98160 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HSPG2P98160 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HSPG2P98160 UTY-215ENST00000618474 6277 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HSPG2P98160 ROBO1-204ENST00000467549 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HSPG2P98160 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC3.64□□□□□ -1.83
HSPG2P98160 PARP4P2-201ENST00000446672 3326 ntBASIC3.64□□□□□ -1.83
HSPG2P98160 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
HSPG2P98160 SLC30A9-201ENST00000264451 6218 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms