Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
COL4A4P53420 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL4A4P53420 RAPGEF5-202ENST00000401957 6159 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
COL4A4P53420 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC6.6□□□□□ -1.35
COL4A4P53420 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL4A4P53420 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL4A4P53420 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
COL4A4P53420 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 TNC-202ENST00000350763 7641 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 RN7SKP162-201ENST00000363605 345 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 SORBS1-210ENST00000371246 6931 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
COL4A4P53420 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 AC136624.1-201ENST00000400791 413 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 RNA5SP156-201ENST00000410250 110 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC6.6□□□□□ -1.35
COL4A4P53420 RPL34P3-201ENST00000421454 338 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 NANOGP4-201ENST00000427230 913 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC6.6□□□□□ -1.35
COL4A4P53420 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 AC117409.1-201ENST00000470499 1310 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 SIAH1P1-201ENST00000479411 923 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 ST13P12-201ENST00000508958 1094 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 TMEM97P2-201ENST00000517841 403 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC6.6□□□□□ -1.35
COL4A4P53420 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.6□□□□□ -1.35
COL4A4P53420 AC092070.2-203ENST00000598377 3644 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 IMMP1LP3-201ENST00000604197 224 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 CCT5-215ENST00000625723 135 ntTSL 5 BASIC6.6□□□□□ -1.35
COL4A4P53420 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC6.6□□□□□ -1.35
COL4A4P53420 OR8G3P-202ENST00000641572 1255 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 RAD18-201ENST00000264926 5886 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 ZC3H13-202ENST00000282007 6412 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.6□□□□□ -1.35
COL4A4P53420 OFD1P17-201ENST00000437639 3018 ntBASIC6.6□□□□□ -1.35
COL4A4P53420 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL4A4P53420 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.6□□□□□ -1.35
COL4A4P53420 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL4A4P53420 AC105235.1-201ENST00000623208 1816 ntBASIC6.59□□□□□ -1.35
COL4A4P53420 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 SELE-203ENST00000367775 3389 ntTSL 5 BASIC6.59□□□□□ -1.35
COL4A4P53420 AC127070.3-201ENST00000503695 3263 ntBASIC6.59□□□□□ -1.35
COL4A4P53420 AL590763.1-201ENST00000398297 1545 ntBASIC6.59□□□□□ -1.35
COL4A4P53420 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 RNA5SP234-201ENST00000363916 119 ntBASIC6.59□□□□□ -1.35
COL4A4P53420 CAV1-204ENST00000393470 598 ntTSL 4 BASIC6.59□□□□□ -1.35
COL4A4P53420 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL4A4P53420 AL121835.1-201ENST00000404250 354 ntBASIC6.59□□□□□ -1.35
COL4A4P53420 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A4P53420 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A4P53420 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A4P53420 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.59□□□□□ -1.35
COL4A4P53420 EEF1B2P6-201ENST00000445713 673 ntBASIC6.59□□□□□ -1.35
COL4A4P53420 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A4P53420 AC106800.3-201ENST00000511389 308 ntBASIC6.59□□□□□ -1.35
COL4A4P53420 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC6.59□□□□□ -1.35
COL4A4P53420 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A4P53420 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC6.59□□□□□ -1.35
COL4A4P53420 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC6.59□□□□□ -1.35
COL4A4P53420 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC6.59□□□□□ -1.35
COL4A4P53420 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
COL4A4P53420 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 KPNA6-201ENST00000373625 7378 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.59□□□□□ -1.35
COL4A4P53420 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC6.59□□□□□ -1.35
COL4A4P53420 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC6.59□□□□□ -1.35
COL4A4P53420 MYOM1-202ENST00000356443 5847 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC6.59□□□□□ -1.35
COL4A4P53420 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL4A4P53420 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC6.59□□□□□ -1.35
COL4A4P53420 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL4A4P53420 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC6.59□□□□□ -1.36
COL4A4P53420 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL4A4P53420 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL4A4P53420 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC6.59□□□□□ -1.36
COL4A4P53420 AC011815.2-201ENST00000618230 2021 ntBASIC6.59□□□□□ -1.36
COL4A4P53420 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.58□□□□□ -1.36
COL4A4P53420 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 AL035660.1-201ENST00000422041 222 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC6.58□□□□□ -1.36
COL4A4P53420 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC6.58□□□□□ -1.36
COL4A4P53420 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.58□□□□□ -1.36
COL4A4P53420 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.58□□□□□ -1.36
COL4A4P53420 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC6.58□□□□□ -1.36
COL4A4P53420 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 AL589674.2-201ENST00000604304 337 ntBASIC6.58□□□□□ -1.36
COL4A4P53420 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL4A4P53420 CBFA2T2-203ENST00000346541 7737 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms