Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AL355598.1-201ENST00000604169 202 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 AL035413.2-201ENST00000604801 525 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 MIR6127-201ENST00000614019 109 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 AC073862.4-201ENST00000622982 854 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 AC007347.2-201ENST00000623044 180 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC8.93□□□□□ -0.98
LRCH3Q96II8 MARK2P10-201ENST00000454959 1437 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC8.93□□□□□ -0.98
LRCH3Q96II8 ATP5A1P3-201ENST00000573189 1507 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 KLRC1-203ENST00000408006 1559 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 OR7E24-201ENST00000456448 1550 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
LRCH3Q96II8 MAP3K19-202ENST00000375844 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 AC026746.1-201ENST00000505623 2105 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 MAPK10-255ENST00000641020 2412 ntBASIC8.93□□□□□ -0.98
LRCH3Q96II8 WISP3-202ENST00000361714 2512 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 ATP5E-201ENST00000243997 3665 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
LRCH3Q96II8 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 HIPK1-208ENST00000426820 4112 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 NDUFB5-214ENST00000493866 4046 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 COPB2-201ENST00000333188 3360 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 PNMA8A-202ENST00000438932 3335 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 CD46-202ENST00000322918 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 CNGA2-201ENST00000329903 2834 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC002480.4-201ENST00000414116 2592 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 LINC00410-201ENST00000419272 2018 ntTSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 ZNF33BP1-201ENST00000452497 1834 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 MTND4P1-201ENST00000457501 1466 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 RNU6-574P-201ENST00000384265 107 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC090114.1-201ENST00000393266 448 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 DNAJC19P6-201ENST00000401853 280 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 NRBF2P2-201ENST00000413087 861 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 TIMM9P3-201ENST00000428659 274 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 TAAR7P-201ENST00000436141 242 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 PIP5K1P2-201ENST00000437005 1120 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 BX679664.2-201ENST00000439282 283 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 RPL7P31-201ENST00000450192 724 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 MIR4422HG-201ENST00000451250 638 ntTSL 3 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 RPS4XP15-201ENST00000489210 795 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 KLRA1P-201ENST00000503499 986 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC098679.2-201ENST00000513067 365 ntTSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC100849.1-202ENST00000517949 562 ntTSL 3 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 TRMT10BP1-201ENST00000519377 943 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC090568.2-203ENST00000521433 579 ntTSL 4 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC044839.1-209ENST00000529769 878 ntTSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC104046.1-201ENST00000559487 406 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 MIR3912-201ENST00000577566 105 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC015818.5-201ENST00000578659 356 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 MIR4310-201ENST00000582950 57 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 RNF157-207ENST00000592271 755 ntTSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 BNIP3P8-201ENST00000597863 560 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 AC006065.6-201ENST00000625201 545 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 LINC01359-205ENST00000634604 1050 ntTSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 MALAT1-202ENST00000534336 8708 ntBASIC8.92□□□□□ -0.98
LRCH3Q96II8 CXorf57-201ENST00000372544 3607 ntTSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 MYH8-201ENST00000403437 6041 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 HNRNPC-201ENST00000336053 3301 ntTSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 CELF2-209ENST00000631460 5538 ntTSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 THADA-202ENST00000402360 2974 ntTSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 NTRK3-221ENST00000629765 2714 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 CCDC15-201ENST00000344762 3893 ntAPPRIS P2 TSL 5 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 ERVV-1-201ENST00000602168 2202 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC8.92□□□□□ -0.98
LRCH3Q96II8 NEDD4L-214ENST00000586263 3347 ntAPPRIS ALT2 TSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 TNPO3-203ENST00000471234 3283 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
LRCH3Q96II8 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC8.91□□□□□ -0.98
LRCH3Q96II8 FHAD1-206ENST00000375998 4355 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
LRCH3Q96II8 CERS6-AS1-201ENST00000425636 2890 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 WDR11-201ENST00000263461 4732 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 SYNE1-217ENST00000466159 2610 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC8.91□□□□□ -0.98
LRCH3Q96II8 ZNF174-203ENST00000571936 1586 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
LRCH3Q96II8 TDP1-202ENST00000393452 2370 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 RAD9B-207ENST00000409778 1373 ntTSL 2 BASIC8.91□□□□□ -0.98
LRCH3Q96II8 MYO1E-201ENST00000288235 8673 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 FAM222B-201ENST00000341217 4033 ntTSL 5 BASIC8.91□□□□□ -0.98
LRCH3Q96II8 KLHL8-202ENST00000425278 4049 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LRCH3Q96II8 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms