Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 RPS2P52-201ENST00000469610 820 ntBASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 AP001271.2-201ENST00000624018 1556 ntBASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 UNC93B5-201ENST00000530315 699 ntBASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4BQ9Y4P1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 AC018553.1-201ENST00000616682 1458 ntBASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 ABHD17AP1-201ENST00000358206 933 ntBASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 UNC93B4-201ENST00000505679 747 ntBASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 AC120498.8-201ENST00000614275 531 ntBASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4BQ9Y4P1 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 AC116351.2-201ENST00000606540 1585 ntBASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4BQ9Y4P1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.71■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms