Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 KRT8P9-201ENST00000558927 1449 ntBASIC20.44■□□□□ 0.86
TDP1Q9NUW8 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TUBB8P6-201ENST00000436895 1288 ntBASIC20.43■□□□□ 0.86
TDP1Q9NUW8 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 AC145285.6-201ENST00000604632 637 ntBASIC20.43■□□□□ 0.86
TDP1Q9NUW8 MIR6786-201ENST00000616843 113 ntBASIC20.43■□□□□ 0.86
TDP1Q9NUW8 AL445675.2-201ENST00000620291 557 ntBASIC20.43■□□□□ 0.86
TDP1Q9NUW8 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.43■□□□□ 0.86
TDP1Q9NUW8 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.42■□□□□ 0.86
TDP1Q9NUW8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 CLDN5-201ENST00000403084 2357 ntBASIC20.42■□□□□ 0.86
TDP1Q9NUW8 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.42■□□□□ 0.86
TDP1Q9NUW8 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TDP1Q9NUW8 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 FITM1-202ENST00000559294 800 ntBASIC20.41■□□□□ 0.86
TDP1Q9NUW8 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TDP1Q9NUW8 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 AL390955.1-201ENST00000428694 934 ntBASIC20.4■□□□□ 0.86
TDP1Q9NUW8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 FSCN1P1-201ENST00000568912 1481 ntBASIC20.4■□□□□ 0.86
TDP1Q9NUW8 AC026271.3-201ENST00000571884 352 ntBASIC20.4■□□□□ 0.86
TDP1Q9NUW8 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
TDP1Q9NUW8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TDP1Q9NUW8 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TDP1Q9NUW8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TDP1Q9NUW8 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms