Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC104581.1-202ENST00000635932 2618 ntBASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 KRT18P60-201ENST00000312876 1297 ntBASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VCX3AQ9NNX9 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 AC068880.1-201ENST00000507289 2297 ntBASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VCX3AQ9NNX9 AC099398.1-201ENST00000567919 2776 ntBASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VCX3AQ9NNX9 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VCX3AQ9NNX9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VCX3AQ9NNX9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms