Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 AC133552.2-202ENST00000575694 574 ntBASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.6■□□□□ 0.89
CCHCR1Q8TD31 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 LETM1P2-201ENST00000597330 2178 ntBASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 AF201337.1-201ENST00000520239 748 ntBASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 AL121832.2-201ENST00000610979 668 ntBASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCHCR1Q8TD31 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 AL050303.2-201ENST00000619798 666 ntBASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 TREX1-205ENST00000625293 1783 ntBASIC20.58■□□□□ 0.89
CCHCR1Q8TD31 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCHCR1Q8TD31 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 AC026471.1-201ENST00000564629 3026 ntBASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 AL512625.2-201ENST00000417533 625 ntBASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 AC105036.2-201ENST00000569468 176 ntBASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 AC009237.14-201ENST00000609975 1594 ntBASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCHCR1Q8TD31 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 CYP21A1P-202ENST00000354927 1481 ntBASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 GPX1P1-201ENST00000388829 606 ntBASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 NCF1B-203ENST00000435988 1254 ntBASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 AC098818.2-201ENST00000564925 2320 ntBASIC20.56■□□□□ 0.88
CCHCR1Q8TD31 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms