Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
HDDC3Q8N4P3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AP002982.1-201ENST00000492365 877 ntBASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AC073195.1-201ENST00000607241 877 ntBASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AC005363.2-201ENST00000618631 242 ntBASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AC092865.7-201ENST00000641832 219 ntBASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
HDDC3Q8N4P3 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
HDDC3Q8N4P3 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HDDC3Q8N4P3 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 SMG8-203ENST00000578922 2178 ntBASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
HDDC3Q8N4P3 AP006587.1-201ENST00000534129 1502 ntBASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HDDC3Q8N4P3 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms