Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 AL031133.1-201ENST00000406807 723 ntBASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 AC139887.4-201ENST00000607877 719 ntBASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 AP000692.2-201ENST00000608391 879 ntBASIC20.33■□□□□ 0.85
SLC44A3Q8N4M1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SLC44A3Q8N4M1 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
SLC44A3Q8N4M1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
SLC44A3Q8N4M1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.33■□□□□ 0.84
SLC44A3Q8N4M1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 Z98882.1-201ENST00000622160 2253 ntBASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 RNF152P1-201ENST00000397754 604 ntBASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 KRT18P16-201ENST00000510337 1294 ntBASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 AL138966.2-201ENST00000621997 464 ntBASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.32■□□□□ 0.84
SLC44A3Q8N4M1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 AL049796.1-201ENST00000565336 1766 ntBASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 TFP1-202ENST00000475455 1573 ntBASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 TUBB8P6-201ENST00000436895 1288 ntBASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 YBX1P10-201ENST00000444752 975 ntBASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SLC44A3Q8N4M1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 AL121603.2-201ENST00000557373 2117 ntBASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 AC116351.2-201ENST00000606540 1585 ntBASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SLC44A3Q8N4M1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SLC44A3Q8N4M1 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms