Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC26.57■■□□□ 1.84
USP54Q70EL1 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC26.57■■□□□ 1.84
USP54Q70EL1 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC26.57■■□□□ 1.84
USP54Q70EL1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC26.57■■□□□ 1.84
USP54Q70EL1 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC26.57■■□□□ 1.84
USP54Q70EL1 FAM87A-204ENST00000613235 858 ntBASIC26.57■■□□□ 1.84
USP54Q70EL1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
USP54Q70EL1 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP54Q70EL1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC26.56■■□□□ 1.84
USP54Q70EL1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC26.56■■□□□ 1.84
USP54Q70EL1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC26.56■■□□□ 1.84
USP54Q70EL1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
USP54Q70EL1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC26.56■■□□□ 1.84
USP54Q70EL1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP54Q70EL1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC26.56■■□□□ 1.84
USP54Q70EL1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP54Q70EL1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP54Q70EL1 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC26.56■■□□□ 1.84
USP54Q70EL1 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP54Q70EL1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP54Q70EL1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP54Q70EL1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
USP54Q70EL1 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
USP54Q70EL1 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
USP54Q70EL1 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP54Q70EL1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC26.55■■□□□ 1.84
USP54Q70EL1 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC26.55■■□□□ 1.84
USP54Q70EL1 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC26.55■■□□□ 1.84
USP54Q70EL1 FDX2-206ENST00000492239 773 ntTSL 2 BASIC26.55■■□□□ 1.84
USP54Q70EL1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC26.55■■□□□ 1.84
USP54Q70EL1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
USP54Q70EL1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP54Q70EL1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP54Q70EL1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP54Q70EL1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
USP54Q70EL1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP54Q70EL1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
USP54Q70EL1 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC26.54■■□□□ 1.84
USP54Q70EL1 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
USP54Q70EL1 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC26.54■■□□□ 1.84
USP54Q70EL1 ECEL1P2-202ENST00000465689 757 ntBASIC26.54■■□□□ 1.84
USP54Q70EL1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC26.54■■□□□ 1.84
USP54Q70EL1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 AP001271.2-201ENST00000624018 1556 ntBASIC26.54■■□□□ 1.84
USP54Q70EL1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC26.54■■□□□ 1.84
USP54Q70EL1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
USP54Q70EL1 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC26.54■■□□□ 1.84
USP54Q70EL1 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP54Q70EL1 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC26.54■■□□□ 1.84
USP54Q70EL1 AC131212.4-201ENST00000623606 975 ntBASIC26.54■■□□□ 1.84
USP54Q70EL1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC26.53■■□□□ 1.84
USP54Q70EL1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC26.53■■□□□ 1.84
USP54Q70EL1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP54Q70EL1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP54Q70EL1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP54Q70EL1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC26.53■■□□□ 1.84
USP54Q70EL1 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP54Q70EL1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC26.53■■□□□ 1.84
USP54Q70EL1 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC26.53■■□□□ 1.84
USP54Q70EL1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
USP54Q70EL1 KRT8P8-201ENST00000434750 1448 ntBASIC26.53■■□□□ 1.84
USP54Q70EL1 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC26.53■■□□□ 1.84
USP54Q70EL1 AC097488.1-201ENST00000507834 756 ntBASIC26.53■■□□□ 1.84
USP54Q70EL1 EGLN1P1-201ENST00000531623 762 ntBASIC26.53■■□□□ 1.84
USP54Q70EL1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC26.53■■□□□ 1.84
USP54Q70EL1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC26.53■■□□□ 1.84
USP54Q70EL1 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP54Q70EL1 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP54Q70EL1 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP54Q70EL1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC26.52■■□□□ 1.84
USP54Q70EL1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC26.52■■□□□ 1.84
USP54Q70EL1 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC26.52■■□□□ 1.84
USP54Q70EL1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC26.52■■□□□ 1.84
USP54Q70EL1 GRAMD4P8-201ENST00000605465 1115 ntBASIC26.52■■□□□ 1.84
USP54Q70EL1 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
USP54Q70EL1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP54Q70EL1 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC26.51■■□□□ 1.83
USP54Q70EL1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC26.51■■□□□ 1.83
USP54Q70EL1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC26.51■■□□□ 1.83
USP54Q70EL1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC26.51■■□□□ 1.83
USP54Q70EL1 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC26.51■■□□□ 1.83
USP54Q70EL1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
USP54Q70EL1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms