Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TRIM40Q6P9F5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM40Q6P9F5 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.99■□□□□ 0.63
TRIM40Q6P9F5 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 PNMA6B-201ENST00000538162 1200 ntBASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRIM40Q6P9F5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRIM40Q6P9F5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRIM40Q6P9F5 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRIM40Q6P9F5 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms